| Candidatus Collierbacteria bacterium GW2011_GWB1_45_35 | NCBITaxon:1618385 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWB2_42_12 | NCBITaxon:1618386 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWB2_44_22 | NCBITaxon:1618387 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWB2_45_17 | NCBITaxon:1618388 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWC1_45_47 | NCBITaxon:1618389 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWC2_43_12 | NCBITaxon:1618390 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWC2_44_13 | NCBITaxon:1618391 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWC2_44_18 | NCBITaxon:1618392 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWC2_44_30 | NCBITaxon:1618393 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWC2_45_15 | NCBITaxon:1618394 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWC2_45_40 | NCBITaxon:1618395 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWD1_44_27 | NCBITaxon:1618396 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWD2_42_50 | NCBITaxon:1618397 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWD2_45_10 | NCBITaxon:1618398 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWE1_46_18 | NCBITaxon:1618399 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWE2_42_48 | NCBITaxon:1618400 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWF1_42_50 | NCBITaxon:1618401 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWF1_44_12 | NCBITaxon:1618402 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWF2_42_51 | NCBITaxon:1618403 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium GW2011_GWF2_44_15 | NCBITaxon:1618404 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium RIFCSPHIGHO2_01_FULL_50_25 | NCBITaxon:1817722 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium RIFCSPHIGHO2_02_FULL_49_10 | NCBITaxon:1817723 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium RIFCSPLOWO2_01_FULL_50_23 | NCBITaxon:1817724 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYA1_FULL_46_24 | NCBITaxon:1817725 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYA2_FULL_46_10 | NCBITaxon:1817726 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYA2_FULL_46_20 | NCBITaxon:1817727 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYB1_FULL_49_13 | NCBITaxon:1817728 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYB2_FULL_46_14 | NCBITaxon:1817729 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYC2_FULL_43_15 | NCBITaxon:1817730 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYD1_FULL_40_9 | NCBITaxon:1817731 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYD1_FULL_46_26 | NCBITaxon:1817732 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium RIFOXYD2_FULL_45_13 | NCBITaxon:1817733 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium UBA2277 | NCBITaxon:1953274 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collierbacteria bacterium UBA5208 | NCBITaxon:1953275 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Collinsella stercoripullorum | NCBITaxon:2838522 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Colousia faecequi | NCBITaxon:3083075 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_41_28 | NCBITaxon:1974539 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_42_22 | NCBITaxon:1974540 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_42_19 | NCBITaxon:1974541 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Colwellbacteria bacterium CG_4_9_14_0_2_um_filter_50_12 | NCBITaxon:1974538 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Colwellbacteria bacterium GWA2_46_10 | NCBITaxon:1797684 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium RBG_13_48_8 | NCBITaxon:1797685 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_02_FULL_43_15 | NCBITaxon:1797686 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_02_FULL_45_17 | NCBITaxon:1797687 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_12_FULL_43_12 | NCBITaxon:1797688 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_12_FULL_44_17 | NCBITaxon:1797689 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPLOWO2_01_FULL_48_10 | NCBITaxon:1797690 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPLOWO2_02_FULL_44_20b | NCBITaxon:1797691 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPLOWO2_02_FULL_45_11 | NCBITaxon:1797692 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPLOWO2_12_FULL_43_11 | NCBITaxon:1797693 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPLOWO2_12_FULL_44_13 | NCBITaxon:1797694 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Colwellbacteria bacterium RIFCSPLOWO2_12_FULL_46_17 | NCBITaxon:1797695 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Colwellia aromaticivorans | NCBITaxon:2267621 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Colwelliibacteriota bacterium | NCBITaxon:2750074 | SPECIES | BACTERIA | 2 | 0 | 15 (15 pooled) | SEEDED |
| Candidatus Comamonas equi | NCBITaxon:3083076 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Combothrix italica | NCBITaxon:2066473 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Comchoanobacter bicostacola | NCBITaxon:2919598 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Comchoanobacteraceae bacterium | NCBITaxon:3107067 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Comchoanobacterales bacterium | NCBITaxon:3107068 | SPECIES | BACTERIA | 2 | 0 | 2 (2 pooled) | SEEDED |
| Candidatus Companilactobacillus pullicola | NCBITaxon:2838523 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Competibacter denitrificans | NCBITaxon:1400862 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Competibacter denitrificans Run_A_D11 | NCBITaxon:1400863 | STRAIN | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Competibacter phosphatis | NCBITaxon:221280 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Competibacter sp. | NCBITaxon:2800415 | SPECIES | BACTERIA | 2 | 0 | 15 (15 pooled) | SEEDED |
| Candidatus Competibacter sp. PAOs2 | NCBITaxon:2609278 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Competibacteraceae bacterium | NCBITaxon:2053538 | SPECIES | BACTERIA | 2 | 0 | 40 (40 pooled) | SEEDED |
| Candidatus Competibacterales bacterium | NCBITaxon:3085106 | SPECIES | BACTERIA | 2 | 0 | 2 (2 pooled) | SEEDED |
| Candidatus Coneutiohabitans beijingensis | NCBITaxon:3396515 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coneutiohabitans nanjingensis | NCBITaxon:3396514 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coneutiohabitans thermophilus | NCBITaxon:3396513 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Conexibacter pandaia | NCBITaxon:3237703 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Contendibacter odensensis | NCBITaxon:1400860 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Contendibacter sp. | NCBITaxon:2651161 | SPECIES | BACTERIA | 2 | 0 | 14 (14 pooled) | SEEDED |
| Candidatus Contendobacter odensis Run_B_J11 | NCBITaxon:1400861 | STRAIN | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Contubernalis alkaliaceticus | NCBITaxon:338645 | SPECIES | BACTERIA | 4 | 1 | 1 | SEEDED |
| Candidatus Contubernalis sp. | NCBITaxon:3060591 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Contubernalis sp. enrichment culture | NCBITaxon:1795661 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprenecus avistercoris | NCBITaxon:2840730 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprenecus merdigallinarum | NCBITaxon:2840731 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprenecus merdipullorum | NCBITaxon:2840732 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprenecus pullicola | NCBITaxon:2840733 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprenecus pullistercoris | NCBITaxon:2840734 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprenecus sp. | NCBITaxon:3048846 | SPECIES | BACTERIA | 2 | 0 | 9 (9 pooled) | SEEDED |
| Candidatus Coprenecus stercoravium | NCBITaxon:2840735 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprenecus stercorigallinarum | NCBITaxon:2840736 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprenecus stercoripullorum | NCBITaxon:2840737 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprocola pullicola | NCBITaxon:2840738 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprocola sp. | NCBITaxon:3101162 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_1 | NCBITaxon:3413074 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_10 | NCBITaxon:3413083 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_2 | NCBITaxon:3413075 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_3 | NCBITaxon:3413076 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_4 | NCBITaxon:3413077 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_5 | NCBITaxon:3413078 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_6 | NCBITaxon:3413079 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_7 | NCBITaxon:3413080 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_8 | NCBITaxon:3413081 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprocola sp. D42_9 | NCBITaxon:3413082 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Copromonas avistercoris (nom. illeg.) | NCBITaxon:2840739 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Copromonas faecavium (nom. illeg.) | NCBITaxon:2840740 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Copronaster equi | NCBITaxon:3083077 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coproplasma avicola | NCBITaxon:2840744 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coproplasma avistercoris | NCBITaxon:2840745 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coproplasma excrementavium | NCBITaxon:2840746 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coproplasma excrementigallinarum | NCBITaxon:2840747 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coproplasma excrementipullorum | NCBITaxon:2840748 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coproplasma sp. | NCBITaxon:3101150 | SPECIES | BACTERIA | 2 | 0 | 19 (19 pooled) | SEEDED |
| Candidatus Coproplasma stercoravium | NCBITaxon:2840749 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coproplasma stercorigallinarum | NCBITaxon:2840750 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coproplasma stercoripullorum | NCBITaxon:2840751 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprosoma intestinipullorum | NCBITaxon:2840752 | SPECIES | BACTERIA | 2 | 0 | 2 (2 pooled) | SEEDED |
| Candidatus Coprosoma sp. | NCBITaxon:3048848 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprousia avicola | NCBITaxon:2840753 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprousia sp. | NCBITaxon:3101127 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprovicinus avistercoris | NCBITaxon:2840754 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprovicinus sp. | NCBITaxon:3101126 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Coprovivens excrementavium | NCBITaxon:2840755 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coprovivens sp. | NCBITaxon:3048849 | SPECIES | BACTERIA | 2 | 0 | 5 (5 pooled) | SEEDED |
| Candidatus Corynebacterium avicola | NCBITaxon:2838527 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Corynebacterium faecigallinarum | NCBITaxon:2838528 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Corynebacterium faecipullorum | NCBITaxon:2838529 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Corynebacterium gallistercoris | NCBITaxon:2838530 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Corynebacterium intestinavium | NCBITaxon:2838531 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Costitxia debesea | NCBITaxon:3138250 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cottocaccamicrobium excrementipullorum | NCBITaxon:2840756 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Coxiella mudrowiae | NCBITaxon:2054173 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Criblamydia sequanensis | NCBITaxon:340071 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Criblamydia sequanensis CRIB-18 | NCBITaxon:1437425 | STRAIN | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Crickella caballi | NCBITaxon:3083078 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Crickella equi | NCBITaxon:3083079 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Crickella merdequi | NCBITaxon:3083080 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryosericota bacterium | NCBITaxon:3107072 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cryosericum hinesii | NCBITaxon:2290915 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Cryosericum odellii | NCBITaxon:2290917 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Cryosericum septentrionale | NCBITaxon:2290913 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Cryosericum sp. | NCBITaxon:2815585 | SPECIES | BACTERIA | 2 | 0 | 7 (7 pooled) | SEEDED |
| Candidatus Cryosericum terrychapinii | NCBITaxon:2290919 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Cryoxeromicrobium davisii | NCBITaxon:2829328 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cryptobacteroides aphodequi | NCBITaxon:3083081 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides avicola | NCBITaxon:2840757 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides avistercoris | NCBITaxon:2840758 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides bacterium | NCBITaxon:3085639 | SPECIES | BACTERIA | 2 | 0 | 8 (8 pooled) | SEEDED |
| Candidatus Cryptobacteroides caccocaballi | NCBITaxon:3083082 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides choladohippi | NCBITaxon:3083083 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides equifaecalis | NCBITaxon:3083084 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides excrementavium | NCBITaxon:2840759 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides excrementigallinarum | NCBITaxon:2840760 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides excrementipullorum | NCBITaxon:2840761 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides faecavium | NCBITaxon:2840762 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides faecigallinarum | NCBITaxon:2840763 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides faecihippi | NCBITaxon:3083085 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides faecipullorum | NCBITaxon:2840764 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides fimicaballi | NCBITaxon:3083086 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides gallistercoris | NCBITaxon:2840765 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides intestinavium | NCBITaxon:2840766 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides intestinigallinarum | NCBITaxon:2840767 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides intestinipullorum | NCBITaxon:2840768 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides merdavium | NCBITaxon:2840769 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides merdigallinarum | NCBITaxon:2840770 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides merdipullorum | NCBITaxon:2840771 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides onthequi | NCBITaxon:3083087 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides pullicola | NCBITaxon:2840772 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptobacteroides sp. | NCBITaxon:2952915 | SPECIES | BACTERIA | 2 | 0 | 127 (127 pooled) | SEEDED |
| Candidatus Cryptoclostridium obscurum | NCBITaxon:2720830 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cryptoclostridium sp. | NCBITaxon:3101031 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cryptoprodota polytropus | NCBITaxon:549339 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus buchneri | NCBITaxon:690594 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus buchneri endosymbiont of Curculio elephas | NCBITaxon:1191161 | FORMA_SPECIALIS | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus buchneri endosymbiont of Curculio glandium | NCBITaxon:1191162 | FORMA_SPECIALIS | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Curculioniphilus buchneri endosymbiont of Curculio nucum | NCBITaxon:1191163 | FORMA_SPECIALIS | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus buchneri endosymbiont of Curculio pellitus | NCBITaxon:1191164 | FORMA_SPECIALIS | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus buchneri endosymbiont of Curculio venosus | NCBITaxon:1191165 | FORMA_SPECIALIS | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus endosymbiont of Curculio camelliae | NCBITaxon:651566 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus endosymbiont of Curculio dentipes | NCBITaxon:651564 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus endosymbiont of Curculio robustus | NCBITaxon:651565 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curculioniphilus endosymbiont of Curculio sikkimensis | NCBITaxon:651563 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium | NCBITaxon:2750075 | SPECIES | BACTERIA | 2 | 0 | 12 (12 pooled) | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWA1_40_16 | NCBITaxon:1618405 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWA1_40_24 | NCBITaxon:1618406 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWA1_40_47 | NCBITaxon:1618407 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWA1_40_9 | NCBITaxon:1618408 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWA1_41_11 | NCBITaxon:1618409 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWA2_40_31 | NCBITaxon:1618410 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWA2_41_24 | NCBITaxon:1618411 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWB1_40_28 | NCBITaxon:1618412 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWC1_44_33 | NCBITaxon:1618413 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWC2_38_9 | NCBITaxon:1618414 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWC2_41_21 | NCBITaxon:1618415 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium GW2011_GWD1_40_8 | NCBITaxon:1618416 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RBG_13_35_7 | NCBITaxon:1797705 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RBG_13_40_7 | NCBITaxon:1797706 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RBG_16_39_7 | NCBITaxon:1797707 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_34_40 | NCBITaxon:1797708 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_39_57 | NCBITaxon:1797709 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_40_12 | NCBITaxon:1797710 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_41_11 | NCBITaxon:1797711 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_41_13 | NCBITaxon:1797745 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_41_44 | NCBITaxon:1797712 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_02_39_8 | NCBITaxon:1797713 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_02_FULL_40_16b | NCBITaxon:1797714 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |