| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_02_FULL_40_17 | NCBITaxon:1797715 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_02_FULL_42_15 | NCBITaxon:1797716 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_02_FULL_42_58 | NCBITaxon:1797717 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_41_11 | NCBITaxon:1797718 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_FULL_38_37 | NCBITaxon:1797719 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_FULL_38_9b | NCBITaxon:1797720 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_FULL_41_13 | NCBITaxon:1797721 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_FULL_41_17 | NCBITaxon:1797722 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_12_FULL_42_33 | NCBITaxon:1797723 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_37_9 | NCBITaxon:1797724 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_38_11b | NCBITaxon:1797725 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_39_62 | NCBITaxon:1797726 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_41_18 | NCBITaxon:1797727 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_41_28 | NCBITaxon:1797728 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_42_26 | NCBITaxon:1797729 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_01_FULL_42_50 | NCBITaxon:1797730 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_02_41_11 | NCBITaxon:1797731 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_02_FULL_40_11 | NCBITaxon:1797732 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_02_FULL_40_13b | NCBITaxon:1797733 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_02_FULL_42_37 | NCBITaxon:1797734 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_12_FULL_38_9 | NCBITaxon:1797735 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFCSPLOWO2_12_FULL_41_16 | NCBITaxon:1797736 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFOXYA1_FULL_41_14 | NCBITaxon:1797737 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFOXYB12_FULL_40_6 | NCBITaxon:1797739 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFOXYB1_FULL_41_59 | NCBITaxon:1797738 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFOXYB2_FULL_41_10 | NCBITaxon:1797740 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFOXYC12_FULL_41_11 | NCBITaxon:1797742 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFOXYC1_FULL_41_36 | NCBITaxon:1797741 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFOXYC2_FULL_41_11 | NCBITaxon:1797743 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Curtissbacteria bacterium RIFOXYD1_FULL_41_36 | NCBITaxon:1797744 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cuticobacterium kirbyi | NCBITaxon:267852 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cyanaurora vandensis | NCBITaxon:2714958 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cyanaurora vandensis LV9 | NCBITaxon:2714960 | STRAIN | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cyanaurora vandensis MP9P1 | NCBITaxon:2714959 | STRAIN | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cybelea palsarum | NCBITaxon:2829340 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cybelea septentrionalis | NCBITaxon:2829337 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cybelea sp. | NCBITaxon:2952917 | SPECIES | BACTERIA | 2 | 0 | 36 (36 pooled) | SEEDED |
| Candidatus Cybelea tumulisoli | NCBITaxon:2829338 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cybelea tyrphae | NCBITaxon:2829339 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cyclobacteriaceae bacterium M2_1C_046 | NCBITaxon:3398224 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cyclobacteriaceae bacterium M3_2C_046 | NCBITaxon:3398223 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Cyrtobacter comes | NCBITaxon:675776 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Cyrtobacter sp. (ex Euplotes eurystomus) | NCBITaxon:2567971 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Cyrtobacter zanobii | NCBITaxon:1222017 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Cytomitobacter indipagum | NCBITaxon:2601575 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Cytomitobacter primus | NCBITaxon:2066024 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Cytomitobacter sp. 10.3 | NCBITaxon:3141959 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cytophaga massiliensis | NCBITaxon:445214 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Cytophaga massiliensis URCM1 | NCBITaxon:1205731 | STRAIN | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Dactylopiibacterium carminicum | NCBITaxon:857335 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Dactylopiibacterium sp. | NCBITaxon:3072877 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dactylopiibacterium sp. CRBC_G2633 | NCBITaxon:3381333 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Dadabacteria bacterium | NCBITaxon:2080303 | SPECIES | BACTERIA | 2 | 0 | 38 (38 pooled) | SEEDED |
| Candidatus Dadabacteria bacterium CSP1-2 | NCBITaxon:1640508 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dadabacteria bacterium RBG_19FT_COMBO_40_33 | NCBITaxon:1797755 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21 | NCBITaxon:1797756 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dadabacteria bacterium UBA1144 | NCBITaxon:1953208 | SPECIES | BACTERIA | 2 | 0 | 2 (2 pooled) | SEEDED |
| Candidatus Dadabacteria bacterium UBA2774 | NCBITaxon:1953209 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Danuiimicrobium aquiferis | NCBITaxon:1801832 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Darwinibacter acetoxidans | NCBITaxon:3082383 | SPECIES | BACTERIA | 2 | 0 | 8 (8 pooled) | SEEDED |
| Candidatus Darwinibacteriaceae bacterium | NCBITaxon:3107078 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Darwinimomas equi | NCBITaxon:3083088 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dasytiphilus stammeri | NCBITaxon:1895663 | SPECIES | BACTERIA | 2 | 0 | 16 (16 pooled) | SEEDED |
| Candidatus Daviesbacteria bacterium | NCBITaxon:2053542 | SPECIES | BACTERIA | 2 | 0 | 32 (32 pooled) | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA1_36_8 | NCBITaxon:1618417 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA1_38_7 | NCBITaxon:1618418 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA1_41_61 | NCBITaxon:1618419 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA1_42_6 | NCBITaxon:1618420 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA2_38_17 | NCBITaxon:1618421 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA2_38_24 | NCBITaxon:1618422 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA2_39_33 | NCBITaxon:1618423 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA2_40_9 | NCBITaxon:1618424 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWA2_42_7 | NCBITaxon:1618425 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWB1_36_5 | NCBITaxon:1618426 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWB1_39_5 | NCBITaxon:1618427 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWB1_41_15 | NCBITaxon:1618428 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWB1_41_5 | NCBITaxon:1618429 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWC1_40_9 | NCBITaxon:1618430 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWC2_40_12 | NCBITaxon:1618431 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWF2_38_6 | NCBITaxon:1618432 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium GW2011_GWF2_38_7 | NCBITaxon:1618433 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium GWA1_38_6 | NCBITaxon:1797757 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_36_37 | NCBITaxon:1797758 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_37_27 | NCBITaxon:1797759 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_38_8 | NCBITaxon:1797760 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_38_8b | NCBITaxon:1797761 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_40_11 | NCBITaxon:1797762 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_40_24 | NCBITaxon:1797763 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_41_23 | NCBITaxon:1797764 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_41_45 | NCBITaxon:1797765 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_43_17 | NCBITaxon:1797766 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_44_29 | NCBITaxon:1797767 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_36_13 | NCBITaxon:1797768 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_37_9 | NCBITaxon:1797769 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_39_12 | NCBITaxon:1797770 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_39_41 | NCBITaxon:1797771 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_39_8 | NCBITaxon:1797772 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_40_16 | NCBITaxon:1797773 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_41_10 | NCBITaxon:1797774 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_41_14 | NCBITaxon:1797775 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_02_FULL_43_12 | NCBITaxon:1797776 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_12_FULL_37_11 | NCBITaxon:1797777 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_12_FULL_37_16 | NCBITaxon:1797778 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_12_FULL_38_25 | NCBITaxon:1797779 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_12_FULL_43_11 | NCBITaxon:1797780 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_12_FULL_47_45 | NCBITaxon:1797781 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_36_8 | NCBITaxon:1797782 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_37_10 | NCBITaxon:1797783 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_38_10 | NCBITaxon:1797784 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_39_12 | NCBITaxon:1797785 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_39_23 | NCBITaxon:1797786 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_40_24 | NCBITaxon:1797787 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_40_27 | NCBITaxon:1797788 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_41_32 | NCBITaxon:1797789 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_43_15 | NCBITaxon:1797790 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_43_38 | NCBITaxon:1797791 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_36_7 | NCBITaxon:1797792 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_36_8 | NCBITaxon:1797793 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_38_15 | NCBITaxon:1797794 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_38_18 | NCBITaxon:1797795 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_39_13 | NCBITaxon:1797796 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_40_8 | NCBITaxon:1797797 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_41_8 | NCBITaxon:1797798 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_02_FULL_43_11 | NCBITaxon:1797799 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFCSPLOWO2_12_FULL_38_10 | NCBITaxon:1797800 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Daviesbacteria bacterium RIFOXYD1_FULL_41_10 | NCBITaxon:1797801 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Dechloromonas phosphoritropha | NCBITaxon:1946401 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dechloromonas phosphorivorans | NCBITaxon:2899244 | SPECIES | BACTERIA | 2 | 0 | 3 (3 pooled) | SEEDED |
| Candidatus Dedyshia acidiphila | NCBITaxon:3400341 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dedyshia sp. | NCBITaxon:3735176 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Deferrimicrobia bacterium | NCBITaxon:3107080 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Deferrimicrobiaceae bacterium | NCBITaxon:3069220 | SPECIES | BACTERIA | 2 | 0 | 17 (17 pooled) | SEEDED |
| Candidatus Deferrimicrobiota bacterium | NCBITaxon:3080328 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Deferrimicrobium borealis | NCBITaxon:2974938 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Deferrimicrobium sp. | NCBITaxon:3060586 | SPECIES | BACTERIA | 2 | 0 | 12 (12 pooled) | SEEDED |
| Candidatus Defluviella procrastinata | NCBITaxon:1222018 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Defluviibacillus avedoerensis | NCBITaxon:3386176 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Defluviibacterium haderslevense | NCBITaxon:2981993 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Defluviicoccus seviourii | NCBITaxon:2565273 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Defluviilinea gracilis | NCBITaxon:3140677 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Defluviilinea proxima | NCBITaxon:3140678 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Defluviilinea sp. | NCBITaxon:3380673 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Dehalobacter alkaniphilus | NCBITaxon:3401927 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dehalobacter sp. J1 | NCBITaxon:3683355 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Deianiraea sp. | NCBITaxon:3101009 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Deianiraea vastatrix | NCBITaxon:2163644 | SPECIES | BACTERIA | 3 | 0 | 1 | SEEDED |
| Candidatus Deianiraeaceae bacterium | NCBITaxon:3073451 | SPECIES | BACTERIA | 2 | 0 | 5 (5 pooled) | SEEDED |
| Candidatus Delongbacteria bacterium | NCBITaxon:2044594 | SPECIES | BACTERIA | 2 | 0 | 19 (19 pooled) | SEEDED |
| Candidatus Delongbacteria bacterium GWF2_40_14 | NCBITaxon:1817817 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Denitrolinea sp. | NCBITaxon:3101105 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Denitrolinea symbiosum | NCBITaxon:2608986 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dependentiae bacterium 12-37-3 | NCBITaxon:1970251 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium ADurb.Bin246 | NCBITaxon:1852839 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dependentiae bacterium ADurb.Bin331 | NCBITaxon:1852840 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium HGW-Dependentiae-1 | NCBITaxon:2013760 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium JGI 005-D018 | NCBITaxon:1955663 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium JGI 005-D06 | NCBITaxon:1955664 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium JGI 005-D08 | NCBITaxon:1955662 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium JGI 006-G14 | NCBITaxon:1955665 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium JGI_SA12_E01_007 | NCBITaxon:2663693 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium JGI_SA12_H04_018 | NCBITaxon:2663694 | SPECIES | BACTERIA | 2 | 0 | 0 | SEEDED |
| Candidatus Dependentiae bacterium Noda2021 | NCBITaxon:2891165 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Dependentiae bacterium UBA6230 | NCBITaxon:1953210 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium bjp_ig2599_36_9 | NCBITaxon:2017450 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Desantisbacteria bacterium bjp_ig3402_39_6 | NCBITaxon:2017451 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Desantisbacteria bacterium bjp_ig3402_44_7 | NCBITaxon:2017452 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Desantisbacteria bacterium CG02_land_8_20_14_3_00_49_13 | NCBITaxon:1974548 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG07_land_8_20_14_0_80_39_15 | NCBITaxon:1974549 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG1_02_38_46 | NCBITaxon:1817893 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG1_02_49_89 | NCBITaxon:1817894 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_40_23 | NCBITaxon:1974550 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG2_30_40_21 | NCBITaxon:1817895 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG_4_10_14_0_8_um_filter_39_17 | NCBITaxon:1974542 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG_4_10_14_0_8_um_filter_48_22 | NCBITaxon:1974543 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG_4_10_14_3_um_filter_40_18 | NCBITaxon:1974544 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG_4_8_14_3_um_filter_40_12 | NCBITaxon:1974545 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG_4_9_14_3_um_filter_40_11 | NCBITaxon:1974546 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisbacteria bacterium CG_4_9_14_3_um_filter_50_7 | NCBITaxon:1974547 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desantisiibacteriota bacterium | NCBITaxon:2282144 | SPECIES | BACTERIA | 2 | 0 | 2 (2 pooled) | SEEDED |
| Candidatus Desulfacyla euxinica | NCBITaxon:2841693 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfacyla sp. | NCBITaxon:3080560 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfaltia bathyphila | NCBITaxon:2841697 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfaltia sp. | NCBITaxon:3060595 | SPECIES | BACTERIA | 2 | 0 | 3 (3 pooled) | SEEDED |
| Candidatus Desulfarcum epimagneticum | NCBITaxon:2487131 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfatibia profunda | NCBITaxon:2841695 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfatibia sp. | NCBITaxon:3101189 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfatibia vada | NCBITaxon:2841696 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfatifera sp. | NCBITaxon:3101188 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Desulfatifera sulfidica | NCBITaxon:2841691 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfobacillus denitrificans | NCBITaxon:2608985 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfobacillus sp. | NCBITaxon:3022865 | SPECIES | BACTERIA | 2 | 0 | 2 (2 pooled) | SEEDED |
| Candidatus Desulfobacula maris | NCBITaxon:2841694 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfobia pelagia | NCBITaxon:2841692 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfobulbus rimicarensis | NCBITaxon:2480839 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfocorpusculum asiaticum | NCBITaxon:3415040 | SPECIES | BACTERIA | 2 | 0 | 1 | SEEDED |
| Candidatus Desulfofervidaceae bacterium | NCBITaxon:2820295 | SPECIES | BACTERIA | 2 | 0 | 3 (3 pooled) | SEEDED |
| Candidatus Desulfofervidales bacterium | NCBITaxon:3107082 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Desulfofervidia bacterium | NCBITaxon:3107083 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |
| Candidatus Desulfofervidus auxilii | NCBITaxon:1621989 | SPECIES | BACTERIA | 4 | 0 | 2 (2 pooled) | SEEDED |
| Candidatus Desulfofervidus sp. | NCBITaxon:2820297 | SPECIES | BACTERIA | 1 | 0 | 0 | SEEDED |