photosynthesis
traitmech:000038 · CLASS · REVIEWED
A phototrophic metabolism that uses light energy and chlorophyll- or bacteriochlorophyll-based photochemical reaction centers to drive electron flow, fixing CO2 and/or generating reducing power. Subdivided into oxygenic and anoxygenic photosynthesis.
Chlorophyll-based photosynthesis drives electron flow and CO2 fixation
Edge evidence
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photosynthesis
enables
photosynthesis
RO:0002327Reaction-center photochemistry underlies the photosynthetic trait.
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DOI:10.1016/j.tim.2006.09.001
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photosynthesis
contributes to
carbon fixation
RO:0002326Photosynthetic electron flow powers autotrophic CO2 fixation.
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DOI:10.1146/annurev-earth-060313-054810
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light energy
enables
light harvesting / excitation transfer
RO:0002327Light energy drives pigment absorption and excitation transfer to reaction-center antennae.
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DOI:10.1111/1751-7915.14519
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light harvesting / excitation transfer
initiates
reaction-center charge separation
Transferred excitation energy drives primary charge separation at the reaction-center special pair.
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DOI:10.3390/biom14030311
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reaction-center charge separation
powers
photosynthetic electron transport
Reaction-center charge separation drives photosynthetic electron transport (linear or cyclic).
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DOI:10.3390/biom14030311
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photosynthetic electron transport
generates
transmembrane electrochemical proton gradient
biolink:producesPhotosynthetic electron transport establishes a transmembrane electrochemical proton gradient.
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DOI:10.3390/biom14030311
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transmembrane electrochemical proton gradient
drives
ATP synthesis
The proton motive force is used to drive chemiosmotic ATP synthesis.
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DOI:10.3390/biom14030311
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photosynthesis
produces
reducing power (NAD(P)H)
METPO:2000202Light-dependent reactions generate ATP and NAD(P)H reducing power.
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DOI:10.5287/ora-8jgz2nrvd
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reducing power (NAD(P)H)
used in
carbon fixation
NADPH reducing power supplies electrons for autotrophic CO2 fixation.
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DOI:10.1111/1751-7915.14519
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1016/j.tim.2006.09.001
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000060[-1.052, -1.766, -1.194, +0.291, …]
Nearest neighbors in embedding space
- metabolism lignin degradation 1.000
- metabolism sulfur oxidation 1.000
- metabolism starch degradation 1.000
- metabolism reductive tricarboxylic acid cycle 1.000
- metabolism proteorhodopsin phototrophy 1.000
- metabolism proteolysis 1.000
- metabolism phototrophy 1.000
- metabolism oxygenic photosynthesis 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Minted intermediate axis class (photosynthesis) under phototrophy to parent the oxygenic- and anoxygenic-photosynthesis traits.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (reaction-center photosynthesis / CO2 fixation) with GO node groundings and RO predicate groundings; promoted PROPOSED to REVIEWED.
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ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (7 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, biolink:produces×1, METPO:2000202×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006754×1).