photosynthesis

traitmech:000038 · CLASS · REVIEWED

A phototrophic metabolism that uses light energy and chlorophyll- or bacteriochlorophyll-based photochemical reaction centers to drive electron flow, fixing CO2 and/or generating reducing power. Subdivided into oxygenic and anoxygenic photosynthesis.

Chlorophyll-based photosynthesis drives electron flow and CO2 fixation

Evidence-backed causal sketch linking chlorophyll-based reaction centers to electron flow that powers CO2 fixation.

Chlorophyll-based photosynthesis drives electron flow and CO2 fixation Interactive directed graph showing evidence-backed causal relationships for photosynthesis.

Edge evidence

  • photosynthesis enables photosynthesis RO:0002327

    Reaction-center photochemistry underlies the photosynthetic trait.

    • DOI:10.1016/j.tim.2006.09.001 Bryant & Frigaard treat reaction-center photosynthesis as encompassing both oxygenic and anoxygenic forms.
  • photosynthesis contributes to carbon fixation RO:0002326

    Photosynthetic electron flow powers autotrophic CO2 fixation.

    • DOI:10.1146/annurev-earth-060313-054810 Fischer et al. frame reaction-center photosynthesis as the chlorophyll-based, CO2-fixing branch of phototrophy.
  • light energy enables light harvesting / excitation transfer RO:0002327

    Light energy drives pigment absorption and excitation transfer to reaction-center antennae.

    • DOI:10.1111/1751-7915.14519 Chlorophyll/antenna pigments absorb and transfer light energy to the photosystems (light harvesting).
  • light harvesting / excitation transfer initiates reaction-center charge separation

    Transferred excitation energy drives primary charge separation at the reaction-center special pair.

    • DOI:10.3390/biom14030311 Light-driven charge separation in reaction-center photosystems initiates downstream electron flow (generic to Type I/II RCs).
  • reaction-center charge separation powers photosynthetic electron transport

    Reaction-center charge separation drives photosynthetic electron transport (linear or cyclic).

    • DOI:10.3390/biom14030311 Light-driven charge separation powers electron transfer pathways; generalization for reaction-center photosystems.
  • photosynthetic electron transport generates transmembrane electrochemical proton gradient biolink:produces

    Photosynthetic electron transport establishes a transmembrane electrochemical proton gradient.

    • DOI:10.3390/biom14030311 Electron transfer creates a transmembrane electrochemical proton gradient (energy-conservation edge).
  • transmembrane electrochemical proton gradient drives ATP synthesis

    The proton motive force is used to drive chemiosmotic ATP synthesis.

    • DOI:10.3390/biom14030311 The electrochemical proton gradient drives ATP synthesis; canonical bioenergetic edge.
  • photosynthesis produces reducing power (NAD(P)H) METPO:2000202

    Light-dependent reactions generate ATP and NAD(P)H reducing power.

    • DOI:10.5287/ora-8jgz2nrvd Light-dependent reactions generate ATP and NAD(P)H; broad linkage across chlorophyll-based photosynthetic systems.
  • reducing power (NAD(P)H) used in carbon fixation

    NADPH reducing power supplies electrons for autotrophic CO2 fixation.

    • DOI:10.1111/1751-7915.14519 NADPH from the light reactions is used in biosynthesis, including carbon fixation.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1016/j.tim.2006.09.001

Parent traits (1)

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000060 [-1.052, -1.766, -1.194, +0.291, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Minted intermediate axis class (photosynthesis) under phototrophy to parent the oxygenic- and anoxygenic-photosynthesis traits.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (reaction-center photosynthesis / CO2 fixation) with GO node groundings and RO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (7 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, biolink:produces×1, METPO:2000202×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006754×1).