pH observation

Provenance

Source

METPO (2025-11-25)

Parent traits (1)

• observation METPO:1001000

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

• metabolism has range oxygen observation 0.105
• metabolism has oxygen delta observation 0.087
• metabolism has range pH observation 0.087
• observation NaCl delta observation 0.072
• quantitative_property has observed spot value 0.068
• morphology sphere shaped 0.060
• genomics GC high 0.058
• metabolism has optimum temperature observation 0.058

Curation history

1. 2026-05-05T01:35:46.931567+00:00 · SEEDED_FROM_METPO · seed_from_metpo

   imported from data/raw/metpo.owl (CLASS)

2. 2026-05-10T00:00:00-07:00 · DEPRECATED_PROPERTY_RECORD · codex

   Deprecated generic observation/value carrier; later replacement should use more specific trait records that combine the observation relation with growth context, measured quantity, chemical, value range, or other entity.

3. 2026-05-17T15:30:00-07:00 · DEPRECATION_CONFIRMED_AS_OUT_OF_SCOPE · claude

   DEPRECATED status confirmed as final after the predicate+class composition pivot (#54/#55/#56). This record's observation-shape modelling is out of scope for TraitMech; the trait vocabulary + mechanism need is met by the un- deprecated METPO predicates, and per-organism numeric observations belong downstream (KG-Microbe / BacDive). See docs/DEPRECATED_REPLACEMENT_PROPOSAL.md, section 'Observation-value records stay deprecated', for the rationale.