GC high

METPO:1000432 · CLASS · REVIEWED

A GC-content phenotype with genome-wide GC composition at or below approximately 42.65% (the METPO `GC_<=42.65` bin; note that the upstream label 'high' does not match this numeric threshold, but the synonym is preserved as the authoritative bin definition).

GC-high (METPO ≤42.65%) low-GC bin

DOI-backed graph linking AT-biased mutation pressure to a GC content at or below ~42.65% (the threshold encoded by the METPO synonym GC_<=42.65 on this record).

GC-high (METPO ≤42.65%) low-GC bin Interactive directed graph showing evidence-backed causal relationships for GC high.

Edge evidence

  • AT-biased mutation pressure produces GC high METPO:2000202

    AT-biased mutation pressure produces low genome-wide GC composition.

    • DOI:10.1186/1471-2148-10-374 mutation bias Supports mutation bias as the primary driver of low-GC composition.
  • GC high is a GC content rdfs:subClassOf

    GC high is a quantitative bin of the GC-content phenotype.

    • DOI:10.1038/nrg2358 GC content Supports the ≤42.65% bin as a value within the GC-content distribution.
  • Cytosine deamination contributes to GC high RO:0002326

    Cytosine deamination drives AT-enriching G->A transitions lowering genome-wide GC.

    • DOI:10.1038/s41467-026-71228-y Spontaneous cytosine deamination produces unrepaired uracil read as thymine, causing G->A transitions (pages 6-7).
  • Loss of uracil-DNA glycosylase (UDG family) causally promotes GC high

    Loss of UDG repair leaves deaminated cytosine unrepaired, promoting GC erosion.

    • DOI:10.1038/s41467-026-71228-y Absence of DNA glycosylases compromises repair of deaminated cytosine (uracil), causing G->A transitions (pages 6-7).
  • Loss of BER glycosylases (Tag/AlkA/MPG/Nei) causally promotes GC high

    Concerted loss of BER glycosylases biases mutation spectra toward GC-eroding changes.

    • DOI:10.1038/s41467-026-71228-y Concerted loss of Tag/AlkA/MPG, UDG, Nei, MutT removed defenses against small-base lesions; mutation spectra biased toward GC-eroding changes (pages 8-9).
  • Loss of MutT nucleotide-pool sanitization causally promotes GC high

    Loss of MutT nucleotide-pool sanitization contributes to GC-eroding mutational dysregulation.

    • DOI:10.1038/s41467-026-71228-y Concerted loss of sanitizing enzymes including MutT removed defenses; analogues showed mutation spectra biased toward GC-eroding changes (pages 8-9).
  • Hypermutator phenotype causally promotes GC high

    Hypermutator state provides a mechanistic path to genome-wide AT enrichment.

    • DOI:10.1038/s41467-026-71228-y Mutator phenotypes (10- to 1e4-fold) with GC-eroding mutation spectra provide a mechanistic path to AT-enrichment (pages 8-9).
  • Third-codon-position AT enrichment contributes to GC high RO:0002326

    AT-rich substitution at third codon positions is a principal driver of decreased GC.

    • DOI:10.1038/s41467-026-71228-y Substitution of third codon positions with AT-rich nucleotides identified as a principal driver of decreased GC (pages 9-10).
  • Purifying selection and biased gene conversion opposes GC high

    Purifying selection and biased gene conversion counteract AT bias, resisting GC decline.

    • DOI:10.63635/mrj.v1i4.188 Purifying selection and biased gene conversion can counteract AT bias (pages 3-5).

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/nrg2358

Parent traits (1)

Synonyms (1)

  • GC_<=42.65 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000432 [+0.921, +1.707, +0.625, +3.297, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition (derived from METPO synonym GC_<=42.65) and causal graph linking AT-biased mutation pressure to this GC bin. Documented the upstream label-vs-threshold inconsistency.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (7 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×2).