GC high
METPO:1000432 · CLASS · REVIEWED
A GC-content phenotype with genome-wide GC composition at or below approximately 42.65% (the METPO `GC_<=42.65` bin; note that the upstream label 'high' does not match this numeric threshold, but the synonym is preserved as the authoritative bin definition).
GC-high (METPO ≤42.65%) low-GC bin
Edge evidence
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AT-biased mutation pressure
produces
GC high
METPO:2000202AT-biased mutation pressure produces low genome-wide GC composition.
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DOI:10.1186/1471-2148-10-374mutation bias
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GC high
is a
GC content
rdfs:subClassOfGC high is a quantitative bin of the GC-content phenotype.
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DOI:10.1038/nrg2358GC content
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Cytosine deamination
contributes to
GC high
RO:0002326Cytosine deamination drives AT-enriching G->A transitions lowering genome-wide GC.
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DOI:10.1038/s41467-026-71228-y
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Loss of uracil-DNA glycosylase (UDG family)
causally promotes
GC high
Loss of UDG repair leaves deaminated cytosine unrepaired, promoting GC erosion.
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DOI:10.1038/s41467-026-71228-y
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Loss of BER glycosylases (Tag/AlkA/MPG/Nei)
causally promotes
GC high
Concerted loss of BER glycosylases biases mutation spectra toward GC-eroding changes.
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DOI:10.1038/s41467-026-71228-y
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Loss of MutT nucleotide-pool sanitization
causally promotes
GC high
Loss of MutT nucleotide-pool sanitization contributes to GC-eroding mutational dysregulation.
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DOI:10.1038/s41467-026-71228-y
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Hypermutator phenotype
causally promotes
GC high
Hypermutator state provides a mechanistic path to genome-wide AT enrichment.
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DOI:10.1038/s41467-026-71228-y
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Third-codon-position AT enrichment
contributes to
GC high
RO:0002326AT-rich substitution at third codon positions is a principal driver of decreased GC.
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DOI:10.1038/s41467-026-71228-y
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Purifying selection and biased gene conversion
opposes
GC high
Purifying selection and biased gene conversion counteract AT bias, resisting GC decline.
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DOI:10.63635/mrj.v1i4.188
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/nrg2358
Parent traits (1)
Synonyms (1)
- GC_<=42.65
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000432[+0.921, +1.707, +0.625, +3.297, …]
Nearest neighbors in embedding space
- morphology cell length large 0.471
- environment temperature delta mid2 0.385
- morphology cell width very small 0.383
- environment pH range mid2 0.382
- environment pH range mid3 0.380
- environment temperature range mid2 0.380
- environment pH range mid1 0.376
- environment temperature range mid4 0.372
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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·
CURATED_CAUSAL_GRAPH · claude
Added DOI-backed definition (derived from METPO synonym GC_<=42.65) and causal graph linking AT-biased mutation pressure to this GC bin. Documented the upstream label-vs-threshold inconsistency.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (7 new nodes) from the deep-research report.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×2).