pH range mid2
METPO:1000462 · CLASS · REVIEWED
A pH range phenotype in which the growth-supporting external pH range spans approximately 7–8, characteristic of neutrophile or mild-alkaliphile physiology.
pH-range-mid2 mild-alkaline-tolerance range
Edge evidence
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modest alkaline-tolerance physiology
enables
pH range mid2
RO:0002327Modest alkaline-tolerance physiology enables growth across pH 7–8.
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DOI:10.1016/j.tim.2007.02.005proton motive force
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pH range mid2
is a
pH range
rdfs:subClassOfpH range mid2 is a quantitative bin of the pH-range phenotype.
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DOI:10.1038/nrmicro2549cytoplasmic pH
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external pH 7-8
permits maintenance of
cytoplasmic pH homeostasis
External pH 7-8 permits cells to keep internal pH near 7.0-7.5.
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DOI:10.1093/femsre/fuad033
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cytoplasmic buffering
stabilizes
cytoplasmic pH homeostasis
Cytoplasmic buffering stabilizes internal pH given very low free proton count.
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DOI:10.1093/femsre/fuad033
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Na+/H+ antiporter activity
acidifies
cytoplasm
Na+/H+ antiporter activity acidifies the cytoplasm when internal pH rises.
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DOI:10.1093/femsre/fuad033
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proton motive force
remains relatively constant across
external pH 5-8
Neutralophiles keep PMF relatively constant across external pH ~5-8.
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DOI:10.1093/femsre/fuad033
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membrane potential / ΔpH rebalancing
maintains
proton motive force
Rebalancing of ΔpH and Δψ with external pH maintains PMF.
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DOI:10.1093/femsre/fuad033
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F0F1-ATPase
couples
ATP synthesis
F0F1-ATPase couples the proton motive force to ATP synthesis.
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DOI:10.1093/femsre/fuad033
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proton:ion antiporters
maintain
membrane potential (Δψ)
Proton:ion antiporters have a direct role in maintaining membrane potential.
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DOI:10.1146/annurev-biophys-030822-032215
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/nrmicro2549
Parent traits (1)
Synonyms (5)
- Alkali Tolerant
- Alkaliphile
- Facultative acidophile
- Neutrophile
- pHR_7_to_8
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000462[-1.204, -0.579, -2.315, +2.278, …]
Nearest neighbors in embedding space
- environment pH range mid1 0.915
- environment pH range low 0.915
- environment pH range mid3 0.882
- environment temperature range low 0.832
- environment temperature range mid1 0.812
- environment temperature delta mid2 0.802
- environment pH optimum mid2 0.796
- environment pH optimum mid1 0.790
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed definition and causal graph linking modest alkaline-tolerance physiology to the pH-range-mid2 bin.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, rdfs:subClassOf×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (12 new nodes) from the deep-research report.
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0051453×1, GO:0005737×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006754×1).