granulibacter_medium (CultureMech:003906)

Overview

External ontology

komodo.medium:1186 (source link unavailable) — GRANULIBACTER medium

Applications

Microbial cultivation

Synonyms

{'name': 'gluconobacter_oxydans_medium', 'source': 'KOMODO', 'source_id': 'komodo.medium:105', 'original_category': 'bacterial'}
{'name': 'acetobacter_medium', 'source': 'MediaDive', 'source_id': 'mediadive.medium:J97', 'original_category': 'bacterial'}
{'name': 'clostridium_sp_medium', 'source': 'MediaDive', 'source_id': 'mediadive.medium:54b', 'original_category': 'bacterial'}
{'name': 'gluconobacter_oxydans_medium', 'source': 'MediaDive', 'source_id': 'mediadive.medium:105', 'original_category': 'bacterial'}
{'name': 'glucose_yeast_extract_medium', 'source': 'KOMODO', 'source_id': 'komodo.medium:54', 'original_category': 'bacterial'}
{'name': 'medium_105_modified_for_dsm_15972', 'source': 'KOMODO', 'source_id': 'komodo.medium:105_15972', 'original_category': 'bacterial'}
{'name': 'glucose_yeast_extract_medium', 'source': 'MediaDive', 'source_id': 'mediadive.medium:54', 'original_category': 'fungal'}

Notes

Source: KOMODO ModelSEED | ID: 1186 | DSMZ Medium: 1186 (mediadive.medium:1186) | Aerobic: No

Composition

flowchart LR
    CultureMech_003906["granulibacter_medium"]
    ing0_Glucose["Glucose"]
    CultureMech_003906 --> ing0_Glucose
    CHEBI_17234["CHEBI:17234"]
    ing0_Glucose -.-> CHEBI_17234
    ing1_Yeast_extract["Yeast extract"]
    CultureMech_003906 --> ing1_Yeast_extract
    ing2_CaCO3["CaCO3"]
    CultureMech_003906 --> ing2_CaCO3
    CHEBI_3311["CHEBI:3311"]
    ing2_CaCO3 -.-> CHEBI_3311
    ing3_Agar["Agar"]
    CultureMech_003906 --> ing3_Agar
    CHEBI_2509["CHEBI:2509"]
    ing3_Agar -.-> CHEBI_2509

Ingredients (4)

#	Ingredient	Concentration	Ontology	Notes
1	Glucose C6H12O6 180.156 g/mol	100 G_PER_L	CHEBI:17234 glucose
2	Yeast extract	10 G_PER_L
3	CaCO3 CO3.Ca 100.086 g/mol	20 G_PER_L	CHEBI:3311 calcium carbonate
4	Agar	15 G_PER_L	CHEBI:2509 agar	(for solid medium)

Target organisms

No target organisms are recorded.

Provenance

Merged from 9 source records.

KOMODO_105_GLUCONOBACTER_OXYDANS_medium (CultureMech:003643)
KOMODO_1186_GRANULIBACTER_medium (CultureMech:003906)
acetobacter_medium (CultureMech:003329)
clostridium_sp_medium (CultureMech:001685)
gluconobacter_oxydans_medium (CultureMech:000492)
glucose_yeast_extract_medium (normalized source unresolved)
granulibacter_medium (CultureMech:000628)
medium_105_modified_for_dsm_15972 (CultureMech:003623)
glucose_yeast_extract_medium (normalized source unresolved)

Timestamp	Curator	Action	Notes
2026-01-27T01:15:01.fZ	komodo-web-import	Imported from KOMODO web table	Source: KOMODO, ID: 1186
2026-02-03T11:19:09.075830	dsmz-resolver-v1.0	Enriched with DSMZ composition	Copied ingredients from DSMZ Medium 1186
2026-03-13T06:19:23.134730Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:003906
2026-03-17T06:30:23.000000Z	mediaingredientmech-enrichment-v1.0	Added MediaIngredientMech links	Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:37.636839+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "GRANULIBACTER medium" to "granulibacter_medium" for consistent matching
2026-06-05T07:40:19.645764+00:00	mim-legacy-to-chebi-migration-v1.0	Refreshed legacy MediaIngredientMech links to CHEBI keying	Replaced 3 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-08-06T03:04:38.892096+00:00	recipe-merger	Merged 9 duplicate recipes into canonical record	Sources: KOMODO_105_GLUCONOBACTER_OXYDANS_medium, KOMODO_1186_GRANULIBACTER_medium, acetobacter_medium, clostridium_sp_medium, gluconobacter_oxydans_medium, glucose_yeast_extract_medium, granulibacter_medium, medium_105_modified_for_dsm_15972, glucose_yeast_extract_medium
2026-08-06T03:04:38.892163+00:00	merge_recipes.py	MERGED_RECIPES	merged 9 source recipe(s) on fingerprint 40ee5d1e6d50ccb81d9e274c3ca09c59b201abc459237b922368b2a793e92c8c