HabitatMech

plant-associated environment

ENVO:01001001 ·resolve ·HOST_ASSOCIATED ·EXACT SEEDED

An environmental system determined by a green plant. — ENVO

Machine-generated and unreviewed. Its grounding comes from the seeder's rules, not from a curator.

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
SourceLabel / pathAssertionsUnit
BACDIVE Herbaceous-plants-Grass,Crops
kg-microbe's isolation-source mapping table has a row for this source with no ontology target; treated as ungrounded rather than re-grounded by lexical match.
2451 STRAIN
ENVIRONMENTS_TABLE host_plant
Physicochemical parameter bands from kg-microbe's environment table.
GOLD Host-associated > Plants
4 GOLD ecosystem node ids share this path; first shown. See data/raw/gold_ecosystem_paths.tsv.
12638 ORGANISM
MADIN plant-associated environment 1206 TAXON

Broader habitats

Environmental parameters

Physicochemical parameters
ParameterValueSource
GRADIENTShighkg-microbe environments.csv (host_plant)
PRESSURElowkg-microbe environments.csv (host_plant)
SALINITY_VARIABILITYsmallkg-microbe environments.csv (host_plant)

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
TaxonSourceRankPoolCorroborated
Sphingomonas sp. NCBITaxon:28214 BACDIVE 1 1394
Methylobacterium sp. NCBITaxon:409 BACDIVE 2 1394
Xanthomonas campestris NCBITaxon:339 BACDIVE 3 1394
Sorangium cellulosum NCBITaxon:56 BACDIVE 4 1394
Nannocystis exedens NCBITaxon:54 BACDIVE 5 1394
Corallococcus coralloides NCBITaxon:184914 BACDIVE 6 1394
Pseudomonas syringae NCBITaxon:317 BACDIVE 7 1394
Rhizobium sp. NCBITaxon:391 BACDIVE 8 1394
Pectobacterium carotovorum NCBITaxon:554 BACDIVE 9 1394
Pseudomonas sp. NCBITaxon:306 BACDIVE 10 1394
Ralstonia solanacearum NCBITaxon:305 BACDIVE 11 1394
Streptomyces scabiei NCBITaxon:1930 BACDIVE 12 1394
Streptomyces sp. NCBITaxon:1931 BACDIVE 13 1394
uncultured Bacillus sp. NCBITaxon:83428 BACDIVE 14 1394
Microbacterium sp. NCBITaxon:51671 BACDIVE 15 1394
Bacillus mycoides NCBITaxon:1405 BACDIVE 16 1394
Methanobacterium bryantii NCBITaxon:2161 BACDIVE 17 1394
Nocardioides sp. NCBITaxon:35761 BACDIVE 18 1394
Paenibacillus sp. NCBITaxon:58172 BACDIVE 19 1394
Ensifer sp. NCBITaxon:1872086 BACDIVE 20 1394
Bacillus thuringiensis NCBITaxon:1428 BACDIVE 21 1394
Acidovorax sp. NCBITaxon:1872122 BACDIVE 22 1394
Curtobacterium flaccumfaciens NCBITaxon:2035 BACDIVE 23 1394
Pedobacter sp. NCBITaxon:1411316 BACDIVE 24 1394
Aeromicrobium sp. NCBITaxon:1871063 BACDIVE 25 1394

Showing 25 of 50 kept associations.

Also called

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

  1. GROUND 2026-08-12 · claude-opus-5

    Grounded to ENVO:01001001 'plant-associated environment' (BROAD). Herbaceous plants, grasses and crops as hosts. ENVO:01001001 covers all plant-associated environments and so is broader than this specific host group. (source concept habitatmech:BACDIVE.d3209b6b2d)

  2. GROUND 2026-08-12 · claude-opus-5

    Grounded to ENVO:01001001 'plant-associated environment' (EXACT). GOLD's Host-associated > Plants is exactly what ENVO:01001001 denotes. Unlike the animal clades there is a single matching term, so no conflation risk. (source concept habitatmech:GOLD.1b21002a97)

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.