acidotolerant
METPO:1003008 · CLASS · REVIEWED
A pH growth preference characterized by the ability to tolerate acidic environments (typically pH below 5.5) while maintaining optimal growth near neutral pH.
Acidotolerant acid-stress pH homeostasis mechanism
Edge evidence
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acidic exposure
challenges
acidotolerant
METPO:2007406Acidotolerant organisms withstand acidic external pH that can be toxic to non-adapted cells.
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DOI:10.1038/nrmicro2549external pH values that would otherwise be toxic
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acidic exposure
increases influx pressure of
proton
Acid exposure increases proton pressure on the cytoplasmic membrane.
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DOI:10.1016/j.tim.2007.02.005rate at which protons leak inward
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proton efflux transport
removes
proton
Proton export helps prevent excessive cytoplasmic acidification.
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DOI:10.1016/j.tim.2007.02.005remove excess protons from the cytoplasm
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cytoplasmic pH homeostasis
enables
acidotolerant
RO:0002327Acid tolerance depends on maintaining cytoplasmic pH during acid challenge.
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DOI:10.1038/nrmicro2549bacterial pH homeostasis is a cell-wide physiological process
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amino-acid decarboxylase system
maintains
cytoplasmic pH homeostasis
Amino-acid decarboxylation (e.g. GadA/B converting glutamate to GABA + CO2) consumes intracellular H+ and sustains cytoplasmic pH homeostasis under acid stress.
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DOI:10.3390/microorganisms12091774
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membrane lipid remodeling
increases
acidotolerant
RO:0002213Membrane lipid remodeling (e.g. conversion of unsaturated to cyclopropane fatty acids) reduces proton permeability and improves acid resistance.
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DOI:10.3390/microorganisms12091774
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membrane lipid remodeling
reduces
inward proton leakage
METPO:2000017Changes in membrane lipids and porins minimize passive inward proton leakage, a broad cross-taxon pH-homeostasis mechanism.
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DOI:10.1038/nrmicro2549
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inward proton leakage
challenges
cytoplasmic pH homeostasis
METPO:2007406Inward proton leakage raises cytoplasmic proton load, opposing maintenance of internal pH.
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DOI:10.1038/nrmicro2549
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cation/H+ antiport
contributes to
cytoplasmic pH homeostasis
RO:0002326Na+/H+ and K+/H+ antiporters exchange cations for protons to stabilize intracellular pH, a core cross-bacterial homeostasis mechanism.
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DOI:10.1038/nrmicro2549
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Provenance
- Source
- METPO (2025-11-25)
- Author
- Jed Dongjin Kim-Ozaeta
- Definition source
- DOI:10.1038/nrmicro2549
Parent traits (1)
Synonyms (1)
- aciduric
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1003008[-2.269, -2.440, -2.363, -0.685, …]
Nearest neighbors in embedding space
- environment acidophilic 0.983
- environment facultatively acidophilic 0.981
- environment alkaphilic 0.981
- environment obligately alkaphilic 0.980
- environment neutrophilic 0.980
- environment facultatively alkaphilic 0.979
- environment obligately acidophilic 0.979
- environment alkalotolerant 0.979
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_LITERATURE · codex
Reviewed acidotolerant trait and added DOI-backed evidence and causal graph for acid-stress pH homeostasis.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007406×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0030641×1).
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FIX_NODE_GROUNDING_CURIE · claude
Overwrote 1 causal-node grounding(s) (obsolete/wrong GO -> corrected, verified vs OAK).
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ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (4 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×1, METPO:2000017×1, METPO:2007406×1, RO:0002326×1).