acidotolerant

METPO:1003008 · CLASS · REVIEWED

A pH growth preference characterized by the ability to tolerate acidic environments (typically pH below 5.5) while maintaining optimal growth near neutral pH.

Acidotolerant acid-stress pH homeostasis mechanism

Evidence-backed causal sketch linking acidotolerance to acidic exposure and maintenance of cytoplasmic pH near compatibility with growth.

Acidotolerant acid-stress pH homeostasis mechanism Interactive directed graph showing evidence-backed causal relationships for acidotolerant.

Edge evidence

  • acidic exposure challenges acidotolerant METPO:2007406

    Acidotolerant organisms withstand acidic external pH that can be toxic to non-adapted cells.

    • DOI:10.1038/nrmicro2549 external pH values that would otherwise be toxic Review supports pH tolerance as adaptation to toxic external pH.
  • acidic exposure increases influx pressure of proton

    Acid exposure increases proton pressure on the cytoplasmic membrane.

    • DOI:10.1016/j.tim.2007.02.005 rate at which protons leak inward Acidophile review frames proton leak as a pH-homeostasis challenge.
  • proton efflux transport removes proton

    Proton export helps prevent excessive cytoplasmic acidification.

    • DOI:10.1016/j.tim.2007.02.005 remove excess protons from the cytoplasm Supports active proton removal as an acid-stress mechanism.
  • cytoplasmic pH homeostasis enables acidotolerant RO:0002327

    Acid tolerance depends on maintaining cytoplasmic pH during acid challenge.

    • DOI:10.1038/nrmicro2549 bacterial pH homeostasis is a cell-wide physiological process Supports pH homeostasis as a broad mechanism for acid tolerance.
  • amino-acid decarboxylase system maintains cytoplasmic pH homeostasis

    Amino-acid decarboxylation (e.g. GadA/B converting glutamate to GABA + CO2) consumes intracellular H+ and sustains cytoplasmic pH homeostasis under acid stress.

    • DOI:10.3390/microorganisms12091774 GadA/B decarboxylate glutamate to GABA + CO2 while consuming intracellular H+; broadly reusable proton-consuming module across bacteria/LAB.
  • membrane lipid remodeling increases acidotolerant RO:0002213

    Membrane lipid remodeling (e.g. conversion of unsaturated to cyclopropane fatty acids) reduces proton permeability and improves acid resistance.

    • DOI:10.3390/microorganisms12091774 Membrane lipids enhance acid resistance by altering saturated/unsaturated ratios or converting unsaturated fatty acids to cyclopropane fatty acids; generic membrane mechanism.
  • membrane lipid remodeling reduces inward proton leakage METPO:2000017

    Changes in membrane lipids and porins minimize passive inward proton leakage, a broad cross-taxon pH-homeostasis mechanism.

    • DOI:10.1038/nrmicro2549 Krulwich review: changes in membrane lipids and porins minimize inward proton leakage.
  • inward proton leakage challenges cytoplasmic pH homeostasis METPO:2007406

    Inward proton leakage raises cytoplasmic proton load, opposing maintenance of internal pH.

    • DOI:10.1038/nrmicro2549 pH homeostasis must counter inward proton leakage to keep cytoplasmic pH near neutral.
  • cation/H+ antiport contributes to cytoplasmic pH homeostasis RO:0002326

    Na+/H+ and K+/H+ antiporters exchange cations for protons to stabilize intracellular pH, a core cross-bacterial homeostasis mechanism.

    • DOI:10.1038/nrmicro2549 Na+/H+ and K+/H+ antiporters support cytoplasmic pH control; generic across bacteria.

Provenance

Source
METPO (2025-11-25)
Author
Jed Dongjin Kim-Ozaeta
Definition source
DOI:10.1038/nrmicro2549

Synonyms (1)

  • aciduric EXACT_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1003008 [-2.269, -2.440, -2.363, -0.685, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Reviewed acidotolerant trait and added DOI-backed evidence and causal graph for acid-stress pH homeostasis.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007406×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0030641×1).

  6. · FIX_NODE_GROUNDING_CURIE · claude

    Overwrote 1 causal-node grounding(s) (obsolete/wrong GO -> corrected, verified vs OAK).

  7. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (4 new nodes) from the deep-research report.

  8. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×1, METPO:2000017×1, METPO:2007406×1, RO:0002326×1).