alkalotolerant

METPO:1003009 · CLASS · REVIEWED

A pH growth preference in which an organism can tolerate alkaline pH but grows optimally at neutral pH.

Alkalotolerant alkaline-stress pH homeostasis mechanism

Evidence-backed causal sketch linking alkalotolerance to alkaline exposure, proton retention, and cation/proton antiport.

Alkalotolerant alkaline-stress pH homeostasis mechanism Interactive directed graph showing evidence-backed causal relationships for alkalotolerant.

Edge evidence

  • alkaline exposure challenges alkalotolerant METPO:2007406

    Alkalotolerance reflects capacity to withstand alkaline pH outside the growth optimum.

    • DOI:10.1016/j.bbamem.2005.09.010 alkali-tolerant and extremely alkaliphilic bacteria Review explicitly covers alkali-tolerant bacteria.
  • alkaline exposure challenges cytoplasmic pH homeostasis METPO:2007406

    Alkaline pH requires maintenance of a less alkaline cytoplasm.

    • DOI:10.1038/nrmicro2549 grow in environments with external pH values Review supports pH homeostasis for growth outside cytoplasmic pH range.
  • proton retention contributes to cytoplasmic pH homeostasis RO:0002326

    Proton capture and retention support pH homeostasis in alkaline environments.

    • DOI:10.1016/j.bbamem.2005.09.010 promote proton capture and retention Supports proton retention mechanisms during alkaline pH challenge.
  • cation/proton antiporter contributes to cytoplasmic pH homeostasis RO:0002326

    Cation/proton antiporters help regulate intracellular pH under alkaline stress.

    • DOI:10.3390/ijms21124566 maintaining ion and pH homeostasis Supports cation/proton antiporters as pH-homeostasis transporters.
  • cytoplasmic pH homeostasis enables alkalotolerant RO:0002327

    Alkaline tolerance depends on maintaining cytoplasmic pH during alkaline exposure.

    • DOI:10.1038/nrmicro2549 cell-wide physiological process Supports pH homeostasis as a broad enabling process.
  • alkaline external pH increases importance of electrogenic Na+/H+ antiport

    Alkaline extracellular pH makes electrogenic Na+/H+ antiport particularly important for proton import.

    • DOI:10.3390/ijms23169156 Negative-inside membrane potential drives Na+ extrusion, particularly important when extracellular pH is alkaline (general prokaryotic mechanism).
  • acidic non-peptidoglycan cell-surface polymers helps maintain cytoplasmic pH homeostasis

    Acidic non-peptidoglycan polymers create surface negative charges that reduce pH at the cell surface and help keep intracellular pH near neutrality.

    • DOI:10.1007/978-4-431-55408-0_4 Acidic non-peptidoglycan polymers create negative charges that reduce pH at the cell surface and help keep intracellular pH controlled.
  • acidic non-peptidoglycan cell-surface polymers adsorbs sodium and hydronium ions

    Negatively charged cell-surface polymers adsorb sodium and hydronium ions.

    • DOI:10.1128/MMBR.63.4.735-750.1999 Cell surface acidic polymers adsorb sodium and hydronium ions; cell-envelope charge chemistry mechanism.
  • acidic non-peptidoglycan cell-surface polymers repels hydroxide ion

    Negatively charged cell-surface polymers repel hydroxide ions, mitigating alkaline stress at the surface.

    • DOI:10.1128/MMBR.63.4.735-750.1999 Acidic non-peptidoglycan polymers repulse hydroxide ions at the cell surface.
  • sodium motive force supports cytoplasmic pH homeostasis

    A sodium motive force mediated by Na+/H+ antiporters and related proteins supports intracellular pH control.

    • DOI:10.1007/s11244-024-01919-7 Sodium motive force mediated by Na+/H+ antiporters, Na+ channels or stator proteins supports intracellular pH control (review-level, broad).

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1016/j.bbamem.2005.09.010

Synonyms (1)

  • alkalitolerant EXACT_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1003009 [-2.574, -1.858, -2.415, -0.954, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Reviewed alkalotolerant trait and added DOI-backed evidence and causal graph for alkaline-stress pH homeostasis.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×2, RO:0002327×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007406×2).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0030641×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A0H3JRG4×1).

  7. · FIX_NODE_GROUNDING_CURIE · claude

    Overwrote 1 causal-node grounding(s) (obsolete/wrong GO -> corrected, verified vs OAK).

  8. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (6 new nodes) from the deep-research report.

  9. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001430×1).

  10. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16234×1).