alkalotolerant
METPO:1003009 · CLASS · REVIEWED
A pH growth preference in which an organism can tolerate alkaline pH but grows optimally at neutral pH.
Alkalotolerant alkaline-stress pH homeostasis mechanism
Edge evidence
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alkaline exposure
challenges
alkalotolerant
METPO:2007406Alkalotolerance reflects capacity to withstand alkaline pH outside the growth optimum.
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DOI:10.1016/j.bbamem.2005.09.010alkali-tolerant and extremely alkaliphilic bacteria
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alkaline exposure
challenges
cytoplasmic pH homeostasis
METPO:2007406Alkaline pH requires maintenance of a less alkaline cytoplasm.
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DOI:10.1038/nrmicro2549grow in environments with external pH values
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proton retention
contributes to
cytoplasmic pH homeostasis
RO:0002326Proton capture and retention support pH homeostasis in alkaline environments.
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DOI:10.1016/j.bbamem.2005.09.010promote proton capture and retention
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cation/proton antiporter
contributes to
cytoplasmic pH homeostasis
RO:0002326Cation/proton antiporters help regulate intracellular pH under alkaline stress.
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DOI:10.3390/ijms21124566maintaining ion and pH homeostasis
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cytoplasmic pH homeostasis
enables
alkalotolerant
RO:0002327Alkaline tolerance depends on maintaining cytoplasmic pH during alkaline exposure.
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DOI:10.1038/nrmicro2549cell-wide physiological process
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alkaline external pH
increases importance of
electrogenic Na+/H+ antiport
Alkaline extracellular pH makes electrogenic Na+/H+ antiport particularly important for proton import.
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DOI:10.3390/ijms23169156
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acidic non-peptidoglycan cell-surface polymers
helps maintain
cytoplasmic pH homeostasis
Acidic non-peptidoglycan polymers create surface negative charges that reduce pH at the cell surface and help keep intracellular pH near neutrality.
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DOI:10.1007/978-4-431-55408-0_4
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acidic non-peptidoglycan cell-surface polymers
adsorbs
sodium and hydronium ions
Negatively charged cell-surface polymers adsorb sodium and hydronium ions.
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DOI:10.1128/MMBR.63.4.735-750.1999
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acidic non-peptidoglycan cell-surface polymers
repels
hydroxide ion
Negatively charged cell-surface polymers repel hydroxide ions, mitigating alkaline stress at the surface.
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DOI:10.1128/MMBR.63.4.735-750.1999
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sodium motive force
supports
cytoplasmic pH homeostasis
A sodium motive force mediated by Na+/H+ antiporters and related proteins supports intracellular pH control.
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DOI:10.1007/s11244-024-01919-7
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1016/j.bbamem.2005.09.010
Parent traits (1)
Synonyms (1)
- alkalitolerant
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1003009[-2.574, -1.858, -2.415, -0.954, …]
Nearest neighbors in embedding space
- environment acidophilic 0.981
- environment facultatively alkaphilic 0.980
- environment alkaphilic 0.979
- environment obligately alkaphilic 0.979
- environment acidotolerant 0.979
- environment neutrophilic 0.978
- environment obligately acidophilic 0.978
- environment facultatively acidophilic 0.978
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_LITERATURE · codex
Reviewed alkalotolerant trait and added DOI-backed evidence and causal graph for alkaline-stress pH homeostasis.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×2, RO:0002327×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007406×2).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0030641×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A0H3JRG4×1).
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FIX_NODE_GROUNDING_CURIE · claude
Overwrote 1 causal-node grounding(s) (obsolete/wrong GO -> corrected, verified vs OAK).
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ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (6 new nodes) from the deep-research report.
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001430×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16234×1).