pH range very low
METPO:1000459 · CLASS · REVIEWED
A pH range phenotype in which growth extends to external pH at or below approximately 4, characteristic of extreme-acidophile physiology.
pH-range-very-low extreme-acidophile range
Edge evidence
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extreme-acidophile envelope barrier
enables
pH range very low
RO:0002327Extreme-acidophile envelope barriers enable growth at pH ≤ 4.
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DOI:10.1016/j.tim.2007.02.005reversed membrane potential
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pH range very low
is a
pH range
rdfs:subClassOfpH range very low is a quantitative bin of the pH-range phenotype.
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DOI:10.1038/nrmicro2549growing at pH 1.0-3.0
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potassium influx / K+ transport
causes
inside-positive (reversed) membrane potential
biolink:causesActive influx of cations such as K+ generates an inside-positive membrane potential.
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DOI:10.1128/9781555818821.ch4.3.1
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inside-positive (reversed) membrane potential
reduces
passive proton influx
METPO:2000017The inside-positive (reversed) membrane potential reduces passive proton influx, supporting a large ΔpH.
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DOI:10.1038/nrmicro2549
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low passive proton permeability
enables maintenance of
near-neutral cytoplasmic pH
Low passive proton permeability enables maintenance of a near-neutral cytoplasmic pH at acidic external pH.
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DOI:10.3389/frbis.2023.1338019
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protonated weak organic acids
diffuse into
cytoplasm
Lipophilic protonated weak organic acids can diffuse across the membrane into the cytoplasm.
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DOI:10.1128/9781555818821.ch4.3.1
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protonated weak organic acids
cause
cytoplasmic acidification
Permeant weak organic acids dissociate inside the cell and acidify the cytoplasm.
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DOI:10.1128/AEM.04031-15
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/nrmicro2549
Parent traits (1)
Synonyms (6)
- Acid Tolerant
- Acidophile
- Extreme Acidophile
- Facultative acidophile
- Obligative acidophile
- pHR_0_to_4
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000459[-0.855, -1.364, -1.665, +2.241, …]
Nearest neighbors in embedding space
- environment pH optimum low 0.550
- environment pH range low 0.530
- environment pH delta high 0.526
- environment pH delta mid3 0.517
- environment pH range 0.495
- environment pH range mid1 0.489
- environment pH range mid2 0.472
- environment pH range mid3 0.470
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed definition and causal graph linking extreme-acidophile envelope barriers to the pH-range-very-low bin.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, rdfs:subClassOf×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (8 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, METPO:2000017×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0005737×1).