pH delta high
METPO:1000478 · CLASS · REVIEWED
A pH delta phenotype with a growth-supporting pH breadth of approximately 5–9 pH units, characteristic of euryphilic pH-tolerance physiology.
pH-delta-high euryphilic breadth
Edge evidence
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maximal pH-homeostasis flexibility
produces
pH delta high
METPO:2000202Maximal pH-homeostasis flexibility yields an extreme pH-delta breadth.
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DOI:10.1016/j.tim.2007.02.005proton motive force
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pH delta high
is a
pH delta
rdfs:subClassOfpH delta high is a quantitative bin of the pH-delta phenotype.
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DOI:10.1038/nrmicro2549pH homeostasis
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Na+/H+ antiporters
contributes to
pH delta high
RO:0002326Na+/H+ antiport is a core regulator of cytoplasmic pH across changing external pH.
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DOI:10.1093/femsre/fuad033
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respiratory proton-pumping enzymes
helps maintain
cytoplasmic pH homeostasis
Electron-transport proton pumps counteract pH stress by controlling proton flux.
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DOI:10.1093/femsre/fuad033
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F0F1-ATPase
contributes to
pH delta high
RO:0002326F0F1-ATPase participates in pH homeostasis via proton extrusion or uptake.
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DOI:10.1093/femsre/fuad033
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metabolite decarboxylation pathways
contributes to
pH delta high
RO:0002326Proton-consuming decarboxylation pathways support broad pH tolerance.
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DOI:10.1093/femsre/fuad033
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cytoplasmic buffering capacity
stabilizes
cytoplasmic pH homeostasis
High buffering capacity limits pH swings, enabling broader pH tolerance.
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DOI:10.1093/femsre/fuad033
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near-neutral cytoplasmic pH
enables
growth across external pH 5.5-9.0
RO:0002327Neutralophiles maintain narrow internal pH while growing over a broad external range.
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DOI:10.1038/nrmicro2549
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constant proton motive force
supports
pH delta high
A relatively constant PMF across external pH is a hallmark of broad pH tolerance.
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DOI:10.1093/femsre/fuad033
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membrane lipid/porin composition changes
reduces
inward proton leakage
METPO:2000017Membrane/porin composition changes lower proton leak during acid stress.
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DOI:10.1038/nrmicro2549
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/nrmicro2549
Parent traits (1)
Synonyms (1)
- pHd_5_9
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000478[-0.781, -1.339, -0.603, +3.022, …]
Nearest neighbors in embedding space
- environment pH range high 0.692
- environment pH range very low 0.526
- environment pH range mid3 0.519
- environment pH range low 0.512
- environment pH range mid2 0.506
- environment pH range mid1 0.486
- environment pH optimum mid2 0.452
- environment temperature range low 0.450
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed definition and causal graph linking maximal pH-homeostasis flexibility to the euryphilic pH-delta-high bin.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 8 evidence-backed generic edges (11 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×3, RO:0002327×1, METPO:2000017×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0051453×1).