pH delta high

METPO:1000478 · CLASS · REVIEWED

A pH delta phenotype with a growth-supporting pH breadth of approximately 5–9 pH units, characteristic of euryphilic pH-tolerance physiology.

pH-delta-high euryphilic breadth

DOI-backed graph linking maximal pH-homeostasis flexibility to a pH growth breadth of approximately 5–9 pH units.

pH-delta-high euryphilic breadth Interactive directed graph showing evidence-backed causal relationships for pH delta high.

Edge evidence

  • maximal pH-homeostasis flexibility produces pH delta high METPO:2000202

    Maximal pH-homeostasis flexibility yields an extreme pH-delta breadth.

    • DOI:10.1016/j.tim.2007.02.005 proton motive force Supports maximal pH-homeostasis flexibility as the basis of euryphilic breadth.
  • pH delta high is a pH delta rdfs:subClassOf

    pH delta high is a quantitative bin of the pH-delta phenotype.

    • DOI:10.1038/nrmicro2549 pH homeostasis Supports the 5–9 unit breadth as a value within the pH-delta distribution.
  • Na+/H+ antiporters contributes to pH delta high RO:0002326

    Na+/H+ antiport is a core regulator of cytoplasmic pH across changing external pH.

    • DOI:10.1093/femsre/fuad033 Key regulators of bacterial pH homeostasis are Na+/H+ and K+/H+ antiporters.
  • respiratory proton-pumping enzymes helps maintain cytoplasmic pH homeostasis

    Electron-transport proton pumps counteract pH stress by controlling proton flux.

    • DOI:10.1093/femsre/fuad033 Proton-pumping enzymes (electron transport components) are major homeostasis regulators.
  • F0F1-ATPase contributes to pH delta high RO:0002326

    F0F1-ATPase participates in pH homeostasis via proton extrusion or uptake.

    • DOI:10.1093/femsre/fuad033 F0F1-ATPase is named among key regulators of bacterial pH homeostasis.
  • metabolite decarboxylation pathways contributes to pH delta high RO:0002326

    Proton-consuming decarboxylation pathways support broad pH tolerance.

    • DOI:10.1093/femsre/fuad033 Metabolite decarboxylation pathways are key regulators of pH homeostasis.
  • cytoplasmic buffering capacity stabilizes cytoplasmic pH homeostasis

    High buffering capacity limits pH swings, enabling broader pH tolerance.

    • DOI:10.1093/femsre/fuad033 Internal pH kept ~7.0-7.5 as buffers absorb fluctuations.
  • near-neutral cytoplasmic pH enables growth across external pH 5.5-9.0 RO:0002327

    Neutralophiles maintain narrow internal pH while growing over a broad external range.

    • DOI:10.1038/nrmicro2549 Neutralophiles grow at external pH ~5.5-9.0 while maintaining cytoplasmic pH ~7.5-7.7.
  • constant proton motive force supports pH delta high

    A relatively constant PMF across external pH is a hallmark of broad pH tolerance.

    • DOI:10.1093/femsre/fuad033 PMF of neutralophilic bacteria kept relatively constant over pH 5 to 8.
  • membrane lipid/porin composition changes reduces inward proton leakage METPO:2000017

    Membrane/porin composition changes lower proton leak during acid stress.

    • DOI:10.1038/nrmicro2549 Membrane lipid and porin composition changes minimize inward proton leakage during acid stress.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/nrmicro2549

Parent traits (1)

Synonyms (1)

  • pHd_5_9 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000478 [-0.781, -1.339, -0.603, +3.022, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking maximal pH-homeostasis flexibility to the euryphilic pH-delta-high bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 8 evidence-backed generic edges (11 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×3, RO:0002327×1, METPO:2000017×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0051453×1).