pH range high

METPO:1000464 · CLASS · REVIEWED

A pH range phenotype in which the growth-supporting external pH range spans approximately 10–14, characteristic of extreme-alkaliphile physiology.

pH-range-high extreme-alkaliphile range

DOI-backed graph linking extreme-alkaliphile Na+/H+ antiporter activity to a pH growth range extending above 10.

pH-range-high extreme-alkaliphile range Interactive directed graph showing evidence-backed causal relationships for pH range high.

Edge evidence

  • extreme-alkaliphile Na+/H+ antiport enables pH range high RO:0002327

    Robust Na+/H+ antiport enables growth at pH > 10.

    • DOI:10.1016/j.tim.2007.02.005 proton motive force Supports antiporter-driven proton re-import as the extreme-alkaliphile mechanism.
  • pH range high is a pH range rdfs:subClassOf

    pH range high is a quantitative bin of the pH-range phenotype.

    • DOI:10.1038/nrmicro2549 alkaliphiles Supports the pH 10–14 range as a value within the pH-range distribution.
  • Mrp Na+/H+ antiporter complex enables pH range high RO:0002327

    The hetero-oligomeric Mrp antiporter has an indispensable role in growth at high pH.

    • DOI:10.1038/nrmicro2549 The unusual hetero-oligomeric Mrp antiporter has an indispensable role at high pH.
  • mrpA-G operon encodes Mrp Na+/H+ antiporter complex biolink:encodes

    The mrpA-G operon encodes the seven proteins forming the hetero-oligomeric Mrp complex.

    • DOI:10.1038/nrmicro2549 Mrp antiporters are encoded in operons containing genes for seven hydrophobic proteins; all required to form the hetero-oligomeric complex.
  • transmembrane potential (delta-psi) drives Mrp Na+/H+ antiporter complex

    A large transmembrane potential drives electrogenic Na+/H+ antiport that imports H+.

    • DOI:10.1038/nrmicro2549 A large transmembrane potential is essential to drive electrogenic Na+/H+ and K+/H+ antiporters that import H+.
  • Na+/solute symporters supplies cytoplasmic Na+

    Na+/solute symporters supply the cytoplasmic Na+ required to sustain antiport activity.

    • DOI:10.1038/nrmicro2549 The ongoing requirement for cytoplasmic Na+ to support high levels of alkaliphile antiport activity is met by numerous Na+/solute symporters.
  • cytoplasmic Na+ enables Mrp Na+/H+ antiporter complex RO:0002327

    Cytoplasmic Na+ is the substrate that sustains high levels of alkaliphile antiport activity.

    • DOI:10.1038/nrmicro2549 Cytoplasmic Na+ is required to support high levels of alkaliphile antiport activity.
  • F1Fo-ATP synthase contributes to alkaline pH homeostasis RO:0002326

    Proton uptake accompanying ATP synthesis contributes to alkaliphile pH homeostasis.

    • DOI:10.1038/nrmicro2549 The proton uptake that accompanies ATP synthesis by the F1Fo-ATP synthase contributes to alkaliphile pH homeostasis.
  • alkaline pH homeostasis enables pH range high RO:0002327

    Maintenance of cytoplasmic pH homeostasis enables growth at strongly alkaline external pH.

    • DOI:10.1038/nrmicro2549 Alkaline pH homeostasis underlies extreme-alkaliphile growth above pH 10.
  • external pH > 10.3 shifts speciation toward carbonate (CO3 2-) speciation

    External pH above ~10.3 shifts dissolved inorganic carbon speciation toward carbonate.

    • DOI:10.1128/AEM.01557-23 DIC speciation shifts strongly with pH, toward CO3= above ~10.3.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/nrmicro2549

Parent traits (1)

Synonyms (4)

  • Alkali Tolerant EXACT_SYNONYM · metpo.owl
  • Alkaliphile EXACT_SYNONYM · metpo.owl
  • Extreme Alkaliphile EXACT_SYNONYM · metpo.owl
  • 10_to_14 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000464 [-2.572, -2.517, -2.299, +3.236, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking extreme-alkaliphile Na+/H+ antiport to the pH-range-high bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, rdfs:subClassOf×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 8 evidence-backed generic edges (9 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×3, biolink:encodes×1, RO:0002326×1).