pH range high
METPO:1000464 · CLASS · REVIEWED
A pH range phenotype in which the growth-supporting external pH range spans approximately 10–14, characteristic of extreme-alkaliphile physiology.
pH-range-high extreme-alkaliphile range
Edge evidence
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extreme-alkaliphile Na+/H+ antiport
enables
pH range high
RO:0002327Robust Na+/H+ antiport enables growth at pH > 10.
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DOI:10.1016/j.tim.2007.02.005proton motive force
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pH range high
is a
pH range
rdfs:subClassOfpH range high is a quantitative bin of the pH-range phenotype.
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DOI:10.1038/nrmicro2549alkaliphiles
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Mrp Na+/H+ antiporter complex
enables
pH range high
RO:0002327The hetero-oligomeric Mrp antiporter has an indispensable role in growth at high pH.
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DOI:10.1038/nrmicro2549
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mrpA-G operon
encodes
Mrp Na+/H+ antiporter complex
biolink:encodesThe mrpA-G operon encodes the seven proteins forming the hetero-oligomeric Mrp complex.
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DOI:10.1038/nrmicro2549
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transmembrane potential (delta-psi)
drives
Mrp Na+/H+ antiporter complex
A large transmembrane potential drives electrogenic Na+/H+ antiport that imports H+.
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DOI:10.1038/nrmicro2549
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Na+/solute symporters
supplies
cytoplasmic Na+
Na+/solute symporters supply the cytoplasmic Na+ required to sustain antiport activity.
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DOI:10.1038/nrmicro2549
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cytoplasmic Na+
enables
Mrp Na+/H+ antiporter complex
RO:0002327Cytoplasmic Na+ is the substrate that sustains high levels of alkaliphile antiport activity.
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DOI:10.1038/nrmicro2549
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F1Fo-ATP synthase
contributes to
alkaline pH homeostasis
RO:0002326Proton uptake accompanying ATP synthesis contributes to alkaliphile pH homeostasis.
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DOI:10.1038/nrmicro2549
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alkaline pH homeostasis
enables
pH range high
RO:0002327Maintenance of cytoplasmic pH homeostasis enables growth at strongly alkaline external pH.
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DOI:10.1038/nrmicro2549
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external pH > 10.3
shifts speciation toward
carbonate (CO3 2-) speciation
External pH above ~10.3 shifts dissolved inorganic carbon speciation toward carbonate.
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DOI:10.1128/AEM.01557-23
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/nrmicro2549
Parent traits (1)
Synonyms (4)
- Alkali Tolerant
- Alkaliphile
- Extreme Alkaliphile
- 10_to_14
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000464[-2.572, -2.517, -2.299, +3.236, …]
Nearest neighbors in embedding space
- environment pH delta high 0.692
- environment pH range mid3 0.632
- environment pH optimum high 0.614
- environment pH range mid2 0.560
- environment pH delta mid3 0.548
- environment pH range low 0.543
- environment pH range mid1 0.538
- environment temperature range low 0.494
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed definition and causal graph linking extreme-alkaliphile Na+/H+ antiport to the pH-range-high bin.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, rdfs:subClassOf×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 8 evidence-backed generic edges (9 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×3, biolink:encodes×1, RO:0002326×1).