temperature optimum very low

METPO:1000441 · CLASS · REVIEWED

A temperature optimum phenotype with the best-growth ambient temperature at or below approximately 10 °C, characteristic of psychrophilic physiology.

Temperature-optimum-very-low psychrophile setpoint

DOI-backed graph linking cold-adapted membrane and enzyme machinery to a temperature optimum at or below ~10 °C.

Temperature-optimum-very-low psychrophile setpoint Interactive directed graph showing evidence-backed causal relationships for temperature optimum very low.

Edge evidence

  • cold environment selects for psychrophile cold-adapted machinery METPO:2007401

    Cold environments select for cold-adapted enzymes and lipids.

    • DOI:10.1038/sj.embor.7400662 growing well at temperatures around the freezing point of water Supports cold habitats as the context for psychrophile machinery.
  • psychrophile cold-adapted machinery produces temperature optimum very low METPO:2000202

    Psychrophile cold-adapted machinery yields a very-low temperature optimum.

    • DOI:10.1146/annurev-micro-091313-103612 more unsaturated fatty acids Supports homoviscous adaptation as the mechanism setting the psychrophile optimum.
  • temperature optimum very low is a temperature optimum rdfs:subClassOf

    Temperature optimum very low is a quantitative bin of the temperature-optimum phenotype.

    • DOI:10.1038/sj.embor.7400662 growing well at temperatures around the freezing point of water Supports a ≤10 °C optimum as a value within the temperature-optimum distribution.
  • fatty acid desaturase activity increases abundance of unsaturated fatty acids

    Fatty acid desaturase activity increases unsaturated acyl chains.

    • DOI:10.17159/sajs.2018/20170254 activation of desaturases, increased unsaturated acyl chains
  • unsaturated fatty acids maintains membrane fluidity at low temperature

    Increased unsaturated fatty acids maintain membrane fluidity at low temperature.

    • DOI:10.1128/AEM.01928-22 maintain membrane fluidity by improving the ratio of unsaturated fatty acids
  • membrane fluidity at low temperature supports psychrophile cold-adapted machinery

    Maintained membrane fluidity supports cold-adapted cellular machinery.

    • DOI:10.1128/AEM.01928-22 maintained membrane fluidity sustains function at low temperature
  • cold shock proteins / RNA chaperones supports translation at low temperature

    Cold shock proteins / RNA chaperones support transcription and translation in the cold.

    • DOI:10.17159/sajs.2018/20170254 Cold-shock proteins are major cold responses, functioning in regulation of transcription/translation
  • glycine betaine stabilizes protein and membrane stabilization under cold stress

    Glycine betaine prevents protein aggregation and stabilizes membranes during cold stress.

    • DOI:10.17159/sajs.2018/20170254 including glycine betaine and trehalose - prevent protein aggregation and stabilize membranes
  • trehalose acts as cryoprotection

    Trehalose acts as a cryoprotectant.

    • DOI:10.1038/sj.embor.7400662 Compatible solutes (trehalose) and extracellular polysaccharides act as cryoprotectants
  • antifreeze / ice-binding proteins causes thermal hysteresis / lowered freezing point biolink:causes

    Antifreeze proteins lower the freezing point via thermal hysteresis.

    • DOI:10.1007/s42770-023-01057-4 AFPs lower freezing point via thermal hysteresis
  • increased enzyme structural flexibility increases catalytic activity at low temperature RO:0002213

    Increased enzyme structural flexibility increases catalytic activity at low temperature.

    • DOI:10.17159/sajs.2018/20170254 Cold-adapted enzymes display increased structural flexibility and higher catalytic efficiency

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/sj.embor.7400662

Synonyms (2)

  • Psychrophile EXACT_SYNONYM · metpo.owl
  • TO_<=10 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000441 [-4.303, -0.200, +0.305, +0.724, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed definition and causal graph linking psychrophile cold-adapted machinery to the temperature-optimum-very-low bin.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007401×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (ENVO:01000309×1).

  6. · ENRICH_CAUSAL_GRAPH · claude

    Added 8 evidence-backed generic edges (13 new nodes) from the deep-research report.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, RO:0002213×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:27208×1, CHEBI:17750×1).