temperature optimum very low
METPO:1000441 · CLASS · REVIEWED
A temperature optimum phenotype with the best-growth ambient temperature at or below approximately 10 °C, characteristic of psychrophilic physiology.
Temperature-optimum-very-low psychrophile setpoint
Edge evidence
-
cold environment
selects for
psychrophile cold-adapted machinery
METPO:2007401Cold environments select for cold-adapted enzymes and lipids.
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DOI:10.1038/sj.embor.7400662growing well at temperatures around the freezing point of water
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psychrophile cold-adapted machinery
produces
temperature optimum very low
METPO:2000202Psychrophile cold-adapted machinery yields a very-low temperature optimum.
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DOI:10.1146/annurev-micro-091313-103612more unsaturated fatty acids
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temperature optimum very low
is a
temperature optimum
rdfs:subClassOfTemperature optimum very low is a quantitative bin of the temperature-optimum phenotype.
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DOI:10.1038/sj.embor.7400662growing well at temperatures around the freezing point of water
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fatty acid desaturase activity
increases abundance of
unsaturated fatty acids
Fatty acid desaturase activity increases unsaturated acyl chains.
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DOI:10.17159/sajs.2018/20170254
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unsaturated fatty acids
maintains
membrane fluidity at low temperature
Increased unsaturated fatty acids maintain membrane fluidity at low temperature.
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DOI:10.1128/AEM.01928-22
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membrane fluidity at low temperature
supports
psychrophile cold-adapted machinery
Maintained membrane fluidity supports cold-adapted cellular machinery.
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DOI:10.1128/AEM.01928-22
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cold shock proteins / RNA chaperones
supports
translation at low temperature
Cold shock proteins / RNA chaperones support transcription and translation in the cold.
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DOI:10.17159/sajs.2018/20170254
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glycine betaine
stabilizes
protein and membrane stabilization under cold stress
Glycine betaine prevents protein aggregation and stabilizes membranes during cold stress.
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DOI:10.17159/sajs.2018/20170254
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trehalose
acts as
cryoprotection
Trehalose acts as a cryoprotectant.
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DOI:10.1038/sj.embor.7400662
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antifreeze / ice-binding proteins
causes
thermal hysteresis / lowered freezing point
biolink:causesAntifreeze proteins lower the freezing point via thermal hysteresis.
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DOI:10.1007/s42770-023-01057-4
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increased enzyme structural flexibility
increases
catalytic activity at low temperature
RO:0002213Increased enzyme structural flexibility increases catalytic activity at low temperature.
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DOI:10.17159/sajs.2018/20170254
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/sj.embor.7400662
Parent traits (1)
Synonyms (2)
- Psychrophile
- TO_<=10
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000441[-4.303, -0.200, +0.305, +0.724, …]
Nearest neighbors in embedding space
- environment temperature optimum 0.719
- environment temperature phenotype with numerical limits 0.651
- environment optimum phenotype with numerical limits 0.626
- environment temperature range 0.617
- environment NaCl optimum 0.577
- environment temperature delta 0.571
- environment pH optimum 0.568
- environment growth range phenotype with numerical limits 0.556
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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·
CURATED_CAUSAL_GRAPH · claude
Added DOI-backed definition and causal graph linking psychrophile cold-adapted machinery to the temperature-optimum-very-low bin.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007401×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (ENVO:01000309×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 8 evidence-backed generic edges (13 new nodes) from the deep-research report.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, RO:0002213×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:27208×1, CHEBI:17750×1).