temperature optimum

METPO:1000304 · CLASS · REVIEWED

A temperature phenotype with numerical limits that represents the ambient-temperature conditions at which an organism exhibits the most efficient growth and reproduction.

Temperature-optimum balanced adaptation

DOI-backed graph linking the ambient temperature at which membrane fluidity, protein folding, and enzyme kinetics jointly maintain maximal growth to the temperature-optimum phenotype.

Temperature-optimum balanced adaptation Interactive directed graph showing evidence-backed causal relationships for temperature optimum.

Edge evidence

  • ambient temperature regulates membrane fluidity RO:0002211

    Ambient temperature sets a target membrane fluidity that the cell must match.

    • DOI:10.1146/annurev-micro-091313-103612 more unsaturated fatty acids Supports temperature as the input to membrane-fluidity adaptation.
  • homoviscous lipid composition regulates membrane fluidity RO:0002211

    Homoviscous lipid composition maintains target membrane fluidity at the optimum temperature.

    • DOI:10.1146/annurev-micro-091313-103612 more unsaturated fatty acids Supports homoviscous adaptation as the mechanism setting membrane fluidity.
  • ambient temperature regulates enzyme kinetics RO:0002211

    Ambient temperature scales enzyme turnover rates across the cellular network.

    • DOI:10.1016/s0300-9629(97)00003-0 energy transducing enzymes Supports temperature as the determinant of enzyme function in adapted organisms.
  • enzyme kinetics enables maximal growth rate RO:0002327

    Adequately fast enzyme kinetics enable peak growth at the optimal temperature.

    • DOI:10.1016/s0300-9629(97)00003-0 adapted to environments of high temperature Supports balanced enzyme kinetics at adapted temperature as the basis of peak growth.
  • maximal growth rate manifests as temperature optimum METPO:2007400

    The ambient temperature supporting peak growth manifests the temperature-optimum phenotype.

    • DOI:10.1016/s0300-9629(97)00003-0 adapted to environments of high temperature Supports the trait endpoint.
  • homeoviscous adaptation regulates membrane fluidity RO:0002211

    Homeoviscous adaptation remodels membrane lipids to maintain target fluidity across temperatures.

    • DOI:10.1007/s42770-023-01057-4 Broad bacterial review: 'to maintain membrane fluidity at low temperature organisms alter membrane lipid composition (homeoviscous adaptation)'.
  • membrane fluidity enables maximal growth rate RO:0002327

    Membrane physical state (fluidity) is a proximal determinant of growth, constraining transport, signaling, and division required for peak growth.

    • DOI:10.1007/s42770-023-01057-4 Membrane fluidity maintenance via homeoviscous adaptation supports the cellular processes underlying growth across the temperature range.
  • Arrhenius plot deviation from linearity indicates stress / non-physiological growth regime

    Deviation from Arrhenius linearity in growth-rate-vs-temperature data marks a stress / non-physiological growth regime, bounding the optimum.

    • DOI:10.37256/amtt.5220244537 'Arrhenius plots, with linear regions indicating physiological growth and deviations indicating stress'.

Provenance

Source
METPO (2025-11-25)
Author
Anthea Guo
Definition source
DOI:10.1016/s0300-9629(97)00003-0

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000304 [-3.535, +0.422, -2.014, +1.133, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking ambient temperature, homoviscous membrane adaptation, enzyme kinetics, and maximal growth to the temperature-optimum phenotype.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  5. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007505×1).

  8. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: membrane fluidity: BIOLOGICAL_PROCESS → QUALITY ×1.

  9. · RENAME_PREDICATE_LABELS · claude

    Renamed 2 causal-edge predicate label(s) to align with existing groundings: influences → regulates ×2.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×2).

  11. · ENRICH_CAUSAL_GRAPH · claude

    Added 3 evidence-backed generic edges (3 new nodes) from the deep-research report.

  12. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1, RO:0002327×1).