3-hydroxypropionate bicycle

traitmech:000023 · CLASS · REVIEWED

An autotrophic carbon-fixation pathway in which two molecules of bicarbonate are fixed via 3-hydroxypropionate and converted to glyoxylate and pyruvate. It is characteristic of the filamentous anoxygenic phototroph Chloroflexus aurantiacus.

3-hydroxypropionate bicycle fixes bicarbonate in Chloroflexus

Evidence-backed causal sketch linking bicarbonate fixation via 3-hydroxypropionate to glyoxylate and pyruvate in Chloroflexus aurantiacus.

3-hydroxypropionate bicycle fixes bicarbonate in Chloroflexus Interactive directed graph showing evidence-backed causal relationships for 3-hydroxypropionate bicycle.

Edge evidence

  • hydrogencarbonate fixed by 3-hydroxypropionate bicycle METPO:2007404

    Two molecules of bicarbonate are fixed per cycle turn.

    • DOI:10.1128/AEM.02473-10 Berg describes the 3-hydroxypropionate bicycle in Chloroflexus.
  • 3-hydroxypropionate bicycle contributes to carbon fixation RO:0002326

    The bicycle is one of the recognized autotrophic CO2-fixation pathways.

    • DOI:10.1146/annurev-marine-120709-142712 Hügler & Sievert include the 3-hydroxypropionate pathway among autotrophic carbon-fixation strategies.
  • acetyl-CoA carboxylase causally upstream of malonyl-CoA

    Acetyl-CoA carboxylase converts acetyl-CoA and bicarbonate to malonyl-CoA at the expense of ATP.

    • DOI:10.17192/z2022.0467 acetyl-CoA carboxylase (EC 6.4.1.2) converts acetyl-CoA and bicarbonate to malonyl-CoA.
  • propionyl-CoA carboxylase causally upstream of (2S)-methylmalonyl-CoA

    Propionyl-CoA carboxylase converts propionyl-CoA and bicarbonate to (2S)-methylmalonyl-CoA at the expense of ATP.

    • DOI:10.17192/z2022.0467 propionyl-CoA carboxylase (EC 6.4.1.3) converts propionyl-CoA and bicarbonate to (2S)-methylmalonyl-CoA.
  • malonyl-CoA reductase causally upstream of 3-hydroxypropionate

    Malonyl-CoA reductase reduces malonyl-CoA to 3-hydroxypropionate; central diagnostic enzyme.

    • DOI:10.1146/annurev-marine-120709-142712 malonyl-CoA reductase reducing malonyl-CoA to 3-hydroxypropionate.
  • propionyl-CoA synthase causally upstream of propionyl-CoA

    Propionyl-CoA synthase converts 3-hydroxypropionate to propionyl-CoA.

    • DOI:10.1146/annurev-marine-120709-142712 propionyl-CoA synthase converting 3-hydroxypropionate to propionyl-CoA.
  • MMC lyase causally upstream of pyruvate

    MMC lyase cleaves citramalyl-CoA to pyruvate and acetyl-CoA.

    • DOI:10.1146/annurev-marine-120709-142712 cleavage of citramalyl-CoA to pyruvate and acetyl-CoA.
  • MMC lyase causally upstream of acetyl-CoA

    MMC lyase cleavage also yields acetyl-CoA alongside pyruvate.

    • DOI:10.1146/annurev-marine-120709-142712 cleavage of citramalyl-CoA to pyruvate and acetyl-CoA.
  • 3-hydroxypropionate bicycle has output pyruvate

    Overall the bicycle produces one pyruvate from three bicarbonates.

    • DOI:10.1146/annurev-marine-120709-142712 producing one pyruvate from three bicarbonates.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1128/AEM.02473-10

Synonyms (1)

  • 3-hydroxypropionate cycle RELATED_SYNONYM · DOI:10.1128/AEM.02473-10

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000060 [-1.052, -1.766, -1.194, +0.291, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate METABOLISM trait (3-hydroxypropionate bicycle); sub-variant of carbon fixation.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (3HP bicycle bicarbonate fixation) with CHEBI/GO node groundings and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (11 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16510×1, CHEBI:15539×1, CHEBI:15361×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A059L760×1, UniProtKB:A0A024E6S7×1, UniProtKB:Q6QQP7×1).