3-hydroxypropionate bicycle
traitmech:000023 · CLASS · REVIEWED
An autotrophic carbon-fixation pathway in which two molecules of bicarbonate are fixed via 3-hydroxypropionate and converted to glyoxylate and pyruvate. It is characteristic of the filamentous anoxygenic phototroph Chloroflexus aurantiacus.
3-hydroxypropionate bicycle fixes bicarbonate in Chloroflexus
Edge evidence
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hydrogencarbonate
fixed by
3-hydroxypropionate bicycle
METPO:2007404Two molecules of bicarbonate are fixed per cycle turn.
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DOI:10.1128/AEM.02473-10
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3-hydroxypropionate bicycle
contributes to
carbon fixation
RO:0002326The bicycle is one of the recognized autotrophic CO2-fixation pathways.
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DOI:10.1146/annurev-marine-120709-142712
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acetyl-CoA carboxylase
causally upstream of
malonyl-CoA
Acetyl-CoA carboxylase converts acetyl-CoA and bicarbonate to malonyl-CoA at the expense of ATP.
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DOI:10.17192/z2022.0467
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propionyl-CoA carboxylase
causally upstream of
(2S)-methylmalonyl-CoA
Propionyl-CoA carboxylase converts propionyl-CoA and bicarbonate to (2S)-methylmalonyl-CoA at the expense of ATP.
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DOI:10.17192/z2022.0467
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malonyl-CoA reductase
causally upstream of
3-hydroxypropionate
Malonyl-CoA reductase reduces malonyl-CoA to 3-hydroxypropionate; central diagnostic enzyme.
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DOI:10.1146/annurev-marine-120709-142712
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propionyl-CoA synthase
causally upstream of
propionyl-CoA
Propionyl-CoA synthase converts 3-hydroxypropionate to propionyl-CoA.
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DOI:10.1146/annurev-marine-120709-142712
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MMC lyase
causally upstream of
pyruvate
MMC lyase cleaves citramalyl-CoA to pyruvate and acetyl-CoA.
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DOI:10.1146/annurev-marine-120709-142712
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MMC lyase
causally upstream of
acetyl-CoA
MMC lyase cleavage also yields acetyl-CoA alongside pyruvate.
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DOI:10.1146/annurev-marine-120709-142712
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3-hydroxypropionate bicycle
has output
pyruvate
Overall the bicycle produces one pyruvate from three bicarbonates.
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DOI:10.1146/annurev-marine-120709-142712
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1128/AEM.02473-10
Parent traits (1)
Synonyms (1)
- 3-hydroxypropionate cycle
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000060[-1.052, -1.766, -1.194, +0.291, …]
Nearest neighbors in embedding space
- metabolism lignin degradation 1.000
- metabolism sulfur oxidation 1.000
- metabolism starch degradation 1.000
- metabolism reductive tricarboxylic acid cycle 1.000
- metabolism proteorhodopsin phototrophy 1.000
- metabolism proteolysis 1.000
- metabolism phototrophy 1.000
- metabolism photosynthesis 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate METABOLISM trait (3-hydroxypropionate bicycle); sub-variant of carbon fixation.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (3HP bicycle bicarbonate fixation) with CHEBI/GO node groundings and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.
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ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (11 new nodes) from the deep-research report.
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GROUND_CAUSAL_NODES · claude
Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16510×1, CHEBI:15539×1, CHEBI:15361×1).
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GROUND_CAUSAL_NODES · claude
Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A059L760×1, UniProtKB:A0A024E6S7×1, UniProtKB:Q6QQP7×1).