3-hydroxypropionate/4-hydroxybutyrate cycle
traitmech:000024 · CLASS · REVIEWED
An autotrophic carbon-fixation pathway that fixes two molecules of bicarbonate per turn via 3-hydroxypropionate and 4-hydroxybutyrate intermediates. It operates in aerobic and microaerophilic Crenarchaeota such as Sulfolobus and Metallosphaera.
3HP/4HB cycle fixes bicarbonate in aerobic Crenarchaeota
Edge evidence
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hydrogencarbonate
fixed by
3-hydroxypropionate/4-hydroxybutyrate cycle
METPO:2007404Two molecules of bicarbonate are fixed per cycle turn.
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DOI:10.1126/science.1149976
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3-hydroxypropionate/4-hydroxybutyrate cycle
contributes to
carbon fixation
RO:0002326The 3HP/4HB cycle is among the six recognized autotrophic pathways.
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DOI:10.1128/AEM.02473-10
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3-hydroxypropionate/4-hydroxybutyrate cycle
produces
acetyl-CoA
METPO:2000202A complete cycle turn fixes two bicarbonate to produce one acetyl-CoA.
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DOI:10.1186/s40643-023-00705-9
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3-hydroxypropionate/4-hydroxybutyrate cycle
forms intermediate
succinyl-CoA
Carboxylation of acetyl-CoA/propionyl-CoA yields succinyl-CoA from two bicarbonate.
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DOI:10.1186/s40643-023-00705-9
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succinyl-CoA
is reduced to
4-hydroxybutyrate
Succinyl-CoA is reduced to 4-hydroxybutyrate.
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DOI:10.1186/s40643-023-00705-9
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4-hydroxybutyryl-CoA dehydratase
dehydrates
4-hydroxybutyryl-CoA
4-hydroxybutyryl-CoA is dehydrated to crotonyl-CoA.
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DOI:10.1038/s42003-024-06432-x
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4-hydroxybutyryl-CoA dehydratase
produces
crotonyl-CoA
METPO:2000202Dehydration of 4-hydroxybutyryl-CoA yields crotonyl-CoA.
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DOI:10.1038/s42003-024-06432-x
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crotonyl-CoA
regenerates
acetyl-CoA
Crotonyl-CoA is processed/cleaved to regenerate acetyl-CoA for further cycle turns.
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DOI:10.1186/s40643-023-00705-9
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NADPH
is required by
3-hydroxypropionate/4-hydroxybutyrate cycle
Reductive steps of the cycle consume NADPH (about four NADPH per turn).
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DOI:10.1186/s40643-023-00705-9
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acetyl-CoA/propionyl-CoA carboxylase
mediates carboxylation in
3-hydroxypropionate/4-hydroxybutyrate cycle
Acetyl-CoA/propionyl-CoA carboxylase is the primary carboxylase fixing inorganic carbon.
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DOI:10.1038/s42003-024-06432-x
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1126/science.1149976
Parent traits (1)
Synonyms (1)
- 3HP/4HB cycle
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000060[-1.052, -1.766, -1.194, +0.291, …]
Nearest neighbors in embedding space
- metabolism lignin degradation 1.000
- metabolism sulfur oxidation 1.000
- metabolism starch degradation 1.000
- metabolism reductive tricarboxylic acid cycle 1.000
- metabolism proteorhodopsin phototrophy 1.000
- metabolism proteolysis 1.000
- metabolism phototrophy 1.000
- metabolism photosynthesis 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate METABOLISM trait (3-hydroxypropionate/4-hydroxybutyrate cycle); archaeal sub-variant of carbon fixation.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (3HP/4HB Sulfolobales bicarbonate fixation) with CHEBI/GO node groundings and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.
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ENRICH_CAUSAL_GRAPH · claude
Added 8 evidence-backed generic edges (8 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×2).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16474×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16724×1, CHEBI:28522×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A650CEQ7×1, UniProtKB:A0A017H5F8×1).