capsule

traitmech:000063 · CLASS · REVIEWED

A morphology trait in which the cell is surrounded by a well-organized layer of polysaccharide (or rarely polypeptide) external to the cell envelope, mediating adhesion, desiccation resistance, and immune evasion.

Capsule polysaccharide layer mediates adhesion and immune evasion

Evidence-backed causal sketch linking capsular polysaccharide biosynthesis to a surface polysaccharide layer that mediates adhesion, desiccation resistance, and immune evasion.

Capsule polysaccharide layer mediates adhesion and immune evasion Interactive directed graph showing evidence-backed causal relationships for capsule.

Edge evidence

  • capsular polysaccharide assembly produces capsular polysaccharide biolink:produces

    Capsule biosynthesis synthesizes and exports the high-MW capsular polysaccharide.

    • DOI:10.1146/annurev.biochem.75.103004.142545 Whitfield reviews biosynthesis, export, and surface assembly of the capsular polysaccharide polymer.
  • capsular polysaccharide assembly enables capsule RO:0002327

    Surface assembly of capsule polymers realizes the capsulated phenotype.

    • DOI:10.1146/annurev.biochem.75.103004.142545 Whitfield reviews biosynthesis and assembly of capsular polysaccharides.
  • capsule contributes to host immune evasion RO:0002326

    The capsule masks surface antigens and reduces phagocytic uptake.

    • DOI:10.1146/annurev.micro.50.1.285 Roberts frames capsular polysaccharide as an immune-evasion and adhesion structure.
  • Wzx flippase flips lipid-linked capsule repeat unit

    Wzx flippase turns the completed lipid-linked repeat unit outward across the inner membrane.

    • DOI:10.1038/s41522-024-00497-6 "the complete repeat unit is turned outward by the Wzx flip enzyme"; general Wzx/Wzy capsule biosynthesis, not taxon-specific.
  • Wzy polymerase polymerizes capsular polysaccharide

    Wzy polymerase attaches the growing chain to new repeat units, building the capsular polysaccharide.

    • DOI:10.1038/s41522-024-00497-6 "the Wzy polymerase attaches the growing polymer chain to the newly formed repeat unit"; general Wzx/Wzy pathway.
  • Wzb phosphatase cycle required for Wzc-regulated capsule assembly

    The Wzb-catalyzed phosphorylation cycle of Wzc is a crucial step for capsule assembly.

    • DOI:10.1038/s41522-024-00497-6 "The phosphorylation cycle of Wzc, catalyzed by Wzb, is a crucial step."; general capsule biosynthesis.
  • Wza outer-membrane export protein exports capsular polysaccharide METPO:2000209

    Wza translocates the assembled capsule polymer across the outer membrane.

    • DOI:10.1038/s41522-024-00497-6 "The polymer translocates across the outer membrane via Wza"; Wzx/Wzy-dependent pathway, broad mechanistic statement.
  • KpsMT ABC transporter exports capsular polysaccharide METPO:2000209

    The KpsMT ABC transporter exports capsule polysaccharide chains across the inner membrane in the ABC-dependent pathway.

    • DOI:10.1038/s41522-024-00497-6 "the ABC transporter (KpsMT) plays a pivotal role in exporting these chains"; general ABC-dependent capsule export.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev.micro.50.1.285

Parent traits (1)

Synonyms (2)

  • capsulated RELATED_SYNONYM · DOI:10.1146/annurev.micro.50.1.285
  • capsular polysaccharide RELATED_SYNONYM · DOI:10.1146/annurev.biochem.75.103004.142545

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate MORPHOLOGY trait (capsule) from literature research to fill the cell-surface-structure gap.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (capsule polysaccharide / immune evasion) with RO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:3379×1).

  4. · FIX_ORPHAN_NODE · claude

    Connected the previously-orphaned capsular_polysaccharide node via a 'produces' (biolink:produces) edge from capsule_assembly.

  5. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (7 new nodes) from the deep-research report.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000209×2).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A0G3EZQ9×1).