chemotaxis

traitmech:000086 · CLASS · REVIEWED

A behavioral physiology in which cells bias their movement toward attractants or away from repellents by modulating flagellar motor switching in response to chemical gradients.

Gradient-guided chemotactic movement

Evidence-backed causal sketch linking chemical gradients to biased motility via flagellar motor control.

Gradient-guided chemotactic movement Interactive directed graph showing evidence-backed causal relationships for chemotaxis.

Edge evidence

  • chemical gradient causes chemotaxis biolink:causes

    A chemical gradient drives the chemotaxis signaling response.

    • DOI:10.1038/nrm1524 Wadhams & Armitage review gradient-guided chemotaxis signaling.
  • chemotaxis enables chemotaxis RO:0002327

    The chemotaxis signaling process realizes the trait.

    • DOI:10.1038/nrmicro2505 Porter et al. review chemotaxis signal processing.
  • chemoreceptor (MCP) modulates CheA autophosphorylation RO:0002211

    Effector binding to chemoreceptors modulates CheA autophosphorylation activity.

    • DOI:10.1146/annurev-micro-032421-110850 Upon effector binding to the receptor, the autophosphorylation activity of CheA is modulated by chemoreceptors.
  • CheA histidine kinase phosphorylates CheY response regulator

    Phosphorylated CheA transfers phosphoryl groups to the response regulator CheY.

    • DOI:10.1146/annurev-micro-032421-110850 When CheA is phosphorylated, it can activate its response regulators CheB and CheY via phosphoryl transfer.
  • CheA histidine kinase phosphorylates CheB methylesterase

    Phosphorylated CheA transfers phosphoryl groups to the methylesterase CheB.

    • DOI:10.1146/annurev-micro-032421-110850 When CheA is phosphorylated, it can activate its response regulators CheB and CheY via phosphoryl transfer.
  • CheY response regulator induces clockwise flagellar rotation

    Phosphorylated CheY interacts with the flagellar motor to induce clockwise rotation.

    • DOI:10.1146/annurev-micro-032421-110850 CheY-P interacts with the flagella to induce clockwise rotation.
  • CheZ phosphatase dephosphorylates CheY response regulator

    CheZ phosphatase dephosphorylates CheY-P to maintain a stable signaling pool.

    • DOI:10.1146/annurev-micro-032421-110850 The phosphatase CheZ dephosphorylates CheY to ensure a stable pool of CheY is available.
  • CheR methyltransferase methylates chemoreceptor (MCP)

    CheR methylates chemoreceptors as part of the reversible adaptation system.

    • DOI:10.1146/annurev-micro-032421-110850 CheB, along with CheR, constitutes an adaptation system that reversibly methylates receptors.
  • CheB methylesterase demethylates chemoreceptor (MCP)

    CheB demethylates chemoreceptors as part of the reversible adaptation system.

    • DOI:10.1146/annurev-micro-032421-110850 CheB, along with CheR, constitutes an adaptation system that reversibly methylates/demethylates receptors.
  • CheW coupling protein scaffolds CheA histidine kinase

    CheW couples and scaffolds CheA with chemoreceptors in the core signaling unit baseplate.

    • DOI:10.1146/annurev-micro-032421-110850 The coupling protein CheW secures CheA; the baseplate consists of the chemoreceptor PIR, CheA, and CheW.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/nrm1524

Parent traits (1)

Synonyms (1)

  • chemotactic RELATED_SYNONYM · DOI:10.1038/nrm1524

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate PHYSIOLOGY trait (chemotaxis), a behavioral response; distinct from the morphological motility apparatus.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (gradient-guided chemotaxis) with GO node grounding and biolink/RO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 8 evidence-backed generic edges (9 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:G0HQV3×1, UniProtKB:A0A2X5A7X5×1, UniProtKB:A0A100WWV3×1).