cobalt tolerant

traitmech:000015 · CLASS · REVIEWED

A metal tolerance in which an organism grows in the presence of elevated cobalt (Co2+) concentrations, typically via cation-efflux resistance systems such as the czc and cnr determinants.

Cobalt tolerance via czc/cnr cation-efflux systems

Evidence-backed causal sketch linking the czc and cnr efflux determinants to cytoplasmic cobalt detoxification.

Cobalt tolerance via czc/cnr cation-efflux systems Interactive directed graph showing evidence-backed causal relationships for cobalt tolerant.

Edge evidence

  • cobalt(2+) ion challenges cobalt tolerant METPO:2007406

    Cytoplasmic cobalt is the toxic challenge the trait counters.

    • DOI:10.3389/fmicb.2020.00047 Cupriavidus metallidurans BS1 tolerates Co(2+) to a MIC of 20 mM.
  • czc/cnr cobalt efflux system enables cobalt ion transmembrane transport RO:0002327

    CzcP exports cobalt together with zinc and cadmium cations.

    • DOI:10.1111/j.1365-2958.2009.06792.x CzcP exports transition metals Zn(2+), Cd(2+), and Co(2+).
  • cobalt ion transmembrane transport mitigates cobalt(2+) ion METPO:2007407

    Czc/cnr-mediated export depletes the cytoplasmic cobalt pool.

    • DOI:10.1111/j.1365-2958.2009.06792.x The czc efflux system of C. metallidurans confers cobalt resistance.
  • CzcCBA efflux complex exports cobalt(2+) ion METPO:2000209

    CzcCBA RND antiporter effluxes cytoplasmic cobalt together with Zn2+ and Cd2+.

    • DOI:10.3390/ijms26125716 CzcCBA, an RND-superfamily chemiosmotic divalent cation/proton antiporter, deals with the efflux of Cd2+, Zn2+, and Co2+.
  • CzcS/CzcR two-component system activates transcription of czcCBA operon expression

    CzcS sensor kinase activates response regulator CzcR, which transcriptionally activates czcCBA.

    • DOI:10.3390/ijms26125716 Activated CzcR functions as a transcriptional activator of czcCBA expression.
  • czcCBA operon expression enables cobalt ion transmembrane transport RO:0002327

    Expression of the czcCBA operon produces the efflux complex enabling cobalt export.

    • DOI:10.3390/ijms26125716 czcCBA encodes the CzcCBA system mediating Co2+ efflux.
  • cnr (cnrCBAYXHT) determinant confers resistance to cobalt tolerant

    The cnrCBAYXHT operon confers cobalt (and nickel) resistance.

    • DOI:10.1007/s44274-025-00301-y This strain exhibits resistance to 3 mM Ni and 5 mM Co, conferred by the cnrCBAYXHT operon located on plasmid pMOL28.
  • DmeF CDF-family exporter exports cobalt(2+) ion METPO:2000209

    DmeF CDF-family exporter preferentially effluxes cobalt.

    • DOI:10.1007/s44274-025-00301-y Co2+ is the preferred substrate for the DmeF protein in Cupriavidus metallidurans CH34.
  • RcnA/YohM Co/Ni efflux protein enables cobalt ion transmembrane transport RO:0002327

    RcnA/YohM is an efflux system for nickel and cobalt, increasing cobalt resistance.

    • DOI:10.1128/JB.187.8.2912-2916.2005 yohM encodes a membrane-bound polypeptide conferring increased nickel and cobalt resistance in E. coli; YohM is the first described efflux system for nickel and cobalt in E. coli.
  • cobalt ion transmembrane transport contributes to cellular cobalt homeostasis RO:0002326

    Czc/Cnr efflux complexes are present even without added metals, contributing to baseline cobalt homeostasis as well as stress resistance.

    • DOI:10.1093/mtomcs/mfae058 Czc-CBA proteins were also present in control cells cultivated without added metals so that Czc has also a function in metal homeostasis.

Provenance

Source
METPO (2025-11-25)
Definition source
PMID:12829273

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate ENVIRONMENT trait (cobalt tolerance) from literature research; metal-specific sub-variant of metal tolerant.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (czc/cnr cobalt efflux) with CHEBI/GO node groundings and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (7 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000209×2, RO:0002327×2, RO:0002326×1).