cobalt tolerant
traitmech:000015 · CLASS · REVIEWED
A metal tolerance in which an organism grows in the presence of elevated cobalt (Co2+) concentrations, typically via cation-efflux resistance systems such as the czc and cnr determinants.
Cobalt tolerance via czc/cnr cation-efflux systems
Edge evidence
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cobalt(2+) ion
challenges
cobalt tolerant
METPO:2007406Cytoplasmic cobalt is the toxic challenge the trait counters.
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DOI:10.3389/fmicb.2020.00047
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czc/cnr cobalt efflux system
enables
cobalt ion transmembrane transport
RO:0002327CzcP exports cobalt together with zinc and cadmium cations.
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DOI:10.1111/j.1365-2958.2009.06792.x
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cobalt ion transmembrane transport
mitigates
cobalt(2+) ion
METPO:2007407Czc/cnr-mediated export depletes the cytoplasmic cobalt pool.
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DOI:10.1111/j.1365-2958.2009.06792.x
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CzcCBA efflux complex
exports
cobalt(2+) ion
METPO:2000209CzcCBA RND antiporter effluxes cytoplasmic cobalt together with Zn2+ and Cd2+.
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DOI:10.3390/ijms26125716
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CzcS/CzcR two-component system
activates transcription of
czcCBA operon expression
CzcS sensor kinase activates response regulator CzcR, which transcriptionally activates czcCBA.
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DOI:10.3390/ijms26125716
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czcCBA operon expression
enables
cobalt ion transmembrane transport
RO:0002327Expression of the czcCBA operon produces the efflux complex enabling cobalt export.
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DOI:10.3390/ijms26125716
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cnr (cnrCBAYXHT) determinant
confers resistance to
cobalt tolerant
The cnrCBAYXHT operon confers cobalt (and nickel) resistance.
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DOI:10.1007/s44274-025-00301-y
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DmeF CDF-family exporter
exports
cobalt(2+) ion
METPO:2000209DmeF CDF-family exporter preferentially effluxes cobalt.
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DOI:10.1007/s44274-025-00301-y
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RcnA/YohM Co/Ni efflux protein
enables
cobalt ion transmembrane transport
RO:0002327RcnA/YohM is an efflux system for nickel and cobalt, increasing cobalt resistance.
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DOI:10.1128/JB.187.8.2912-2916.2005
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cobalt ion transmembrane transport
contributes to
cellular cobalt homeostasis
RO:0002326Czc/Cnr efflux complexes are present even without added metals, contributing to baseline cobalt homeostasis as well as stress resistance.
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DOI:10.1093/mtomcs/mfae058
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- PMID:12829273
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000059[-2.682, -2.070, -3.656, -0.652, …]
Nearest neighbors in embedding space
- environment cadmium tolerant 1.000
- morphology sulfur globule 1.000
- physiology quorum sensing 1.000
- environment copper tolerant 1.000
- environment desiccation tolerant 1.000
- environment piezophilic 1.000
- environment obligately piezophilic 1.000
- morphology gas vesicle 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate ENVIRONMENT trait (cobalt tolerance) from literature research; metal-specific sub-variant of metal tolerant.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (czc/cnr cobalt efflux) with CHEBI/GO node groundings and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.
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ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (7 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000209×2, RO:0002327×2, RO:0002326×1).