gas vesicle

traitmech:000070 · CLASS · REVIEWED

An intracellular gas-filled proteinaceous inclusion that provides buoyancy, allowing planktonic bacteria and archaea to position themselves in the water column.

Gas vesicles provide buoyancy and water-column positioning

Evidence-backed causal sketch linking proteinaceous gas-filled intracellular vesicles to buoyancy and vertical positioning in the water column.

Gas vesicles provide buoyancy and water-column positioning Interactive directed graph showing evidence-backed causal relationships for gas vesicle.

Edge evidence

  • gas vesicle enables cellular buoyancy RO:0002327

    Internal gas-filled vesicles lower effective density and provide buoyancy.

    • DOI:10.1038/nrmicro2834 Pfeifer describes gas vesicles as gas-filled flotation structures.
  • cellular buoyancy enables water-column positioning RO:0002327

    Buoyancy allows planktonic bacteria/archaea to position in the water column.

    • DOI:10.1038/s41579-020-0413-0 Greening & Lithgow include gas vesicles among bacterial intracellular organelles.
  • GvpA forms gas vesicle shell biolink:produces

    GvpA is a small hydrophobic protein that forms the hollow protein shell of the gas vesicle.

    • DOI:10.1186/s13036-024-00426-3 GvpA is the structural protein that forms the hollow protein structure of GV.
  • GvpC strengthens gas vesicle shell

    GvpC is a coat protein that strengthens the gas vesicle shell.

    • DOI:10.1186/s13036-024-00426-3 GvpC has the function of strengthening the GV shell.
  • hydrophobic inner shell surface prevents water condensation into lumen RO:0002212

    The hydrophobic inner surface prevents heterogeneous condensation of water into liquid, maintaining the gas compartment.

    • DOI:10.1038/s44318-024-00178-2 GVs maintain an inner gas compartment via a hydrophobic inner surface that prevents condensation of water into liquid.
  • hydrostatic pressure causes gas vesicle collapse biolink:causes

    Above a critical pressure the gas vesicle irreversibly collapses.

    • DOI:10.1186/s13036-024-00426-3 When GVs are under pressure, there is a critical point at which the GV irreversibly collapses.
  • GvpD inhibits gas vesicle formation RO:0002212

    GvpD has an inhibitory effect on gas vesicle formation.

    • DOI:10.1186/s13036-024-00426-3 GvpD has an inhibitory effect on GV formation.
  • gas vesicle shell enables ultrasound scattering RO:0002327

    The gas-filled vesicle scatters ultrasound due to density/compressibility contrast with the surrounding medium.

    • DOI:10.1021/acssynbio.4c00283 GVs scatter US due to the difference in density and compressibility of their gaseous interior relative to surrounding aqueous medium.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/nrmicro2834

Synonyms (1)

  • gas vacuole RELATED_SYNONYM · DOI:10.1038/nrmicro2834

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate MORPHOLOGY trait (gas vesicle / gas vacuole); buoyancy sub-variant of intracellular inclusion.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (gas vesicle buoyancy / water-column positioning) with RO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (10 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×2, biolink:produces×1, biolink:causes×1, RO:0002327×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001025×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0033172×1, GO:0031412×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A0B5ENA7×1, UniProtKB:A0AA45D9L5×1, UniProtKB:A0A059TSE2×1).