gas vesicle
traitmech:000070 · CLASS · REVIEWED
An intracellular gas-filled proteinaceous inclusion that provides buoyancy, allowing planktonic bacteria and archaea to position themselves in the water column.
Gas vesicles provide buoyancy and water-column positioning
Edge evidence
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gas vesicle
enables
cellular buoyancy
RO:0002327Internal gas-filled vesicles lower effective density and provide buoyancy.
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DOI:10.1038/nrmicro2834
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cellular buoyancy
enables
water-column positioning
RO:0002327Buoyancy allows planktonic bacteria/archaea to position in the water column.
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DOI:10.1038/s41579-020-0413-0
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GvpA
forms
gas vesicle shell
biolink:producesGvpA is a small hydrophobic protein that forms the hollow protein shell of the gas vesicle.
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DOI:10.1186/s13036-024-00426-3
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GvpC
strengthens
gas vesicle shell
GvpC is a coat protein that strengthens the gas vesicle shell.
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DOI:10.1186/s13036-024-00426-3
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hydrophobic inner shell surface
prevents
water condensation into lumen
RO:0002212The hydrophobic inner surface prevents heterogeneous condensation of water into liquid, maintaining the gas compartment.
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DOI:10.1038/s44318-024-00178-2
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hydrostatic pressure
causes
gas vesicle collapse
biolink:causesAbove a critical pressure the gas vesicle irreversibly collapses.
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DOI:10.1186/s13036-024-00426-3
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GvpD
inhibits
gas vesicle formation
RO:0002212GvpD has an inhibitory effect on gas vesicle formation.
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DOI:10.1186/s13036-024-00426-3
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gas vesicle shell
enables
ultrasound scattering
RO:0002327The gas-filled vesicle scatters ultrasound due to density/compressibility contrast with the surrounding medium.
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DOI:10.1021/acssynbio.4c00283
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1038/nrmicro2834
Parent traits (1)
Synonyms (1)
- gas vacuole
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000059[-2.682, -2.070, -3.656, -0.652, …]
Nearest neighbors in embedding space
- morphology polyhydroxyalkanoate granule 1.000
- environment cadmium tolerant 1.000
- environment cobalt tolerant 1.000
- environment copper tolerant 1.000
- environment desiccation tolerant 1.000
- environment piezotolerant 1.000
- environment UV radiation tolerant 1.000
- physiology quorum sensing 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate MORPHOLOGY trait (gas vesicle / gas vacuole); buoyancy sub-variant of intracellular inclusion.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (gas vesicle buoyancy / water-column positioning) with RO predicate groundings; promoted PROPOSED to REVIEWED.
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ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (10 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 5 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×2, biolink:produces×1, biolink:causes×1, RO:0002327×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001025×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0033172×1, GO:0031412×1).
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GROUND_CAUSAL_NODES · claude
Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A0B5ENA7×1, UniProtKB:A0AA45D9L5×1, UniProtKB:A0A059TSE2×1).