copper tolerant

traitmech:000018 · CLASS · REVIEWED

A metal tolerance in which an organism grows in the presence of elevated copper (Cu2+/Cu+) concentrations, typically via the cue, cus, pco, and cop systems and ATPase-driven cytoplasmic copper efflux.

Copper tolerance via cop/cue/cus/pco efflux systems

Evidence-backed causal sketch linking dedicated copper-efflux machinery to cytoplasmic copper detoxification.

Copper tolerance via cop/cue/cus/pco efflux systems Interactive directed graph showing evidence-backed causal relationships for copper tolerant.

Edge evidence

  • copper(2+) ion challenges copper tolerant METPO:2007406

    Elevated cytoplasmic copper is the toxic challenge the trait counters.

    • DOI:10.3389/fmicb.2020.00047 Cupriavidus metallidurans BS1 tolerates Cu(2+) to a MIC of 5 mM.
  • copper efflux systems (cue/cus/pco/cop) enables copper ion transmembrane transport RO:0002327

    Cue/cus/pco/cop pumps drive ATPase-mediated copper export.

    • DOI:10.1007/s10565-013-9262-1 Review supports ATPase-driven efflux via cue/cus/pco/cop systems as the main copper detoxification mechanism.
  • copper ion transmembrane transport mitigates copper(2+) ion METPO:2007407

    Copper export depletes the cytoplasmic copper pool.

    • DOI:10.1007/s10565-013-9262-1 Cytoplasmic copper detoxification is the basis of bacterial copper tolerance.
  • copper(2+) ion causes ROS-mediated oxidative damage biolink:causes

    Excess intracellular copper drives Fenton-like reactions producing ROS that damage cellular macromolecules.

    • DOI:10.3390/antibiotics12091474 Cu(I) driving Fenton-like reactions causing damage to lipids, proteins and DNA and disrupting Fe-S clusters; defines why tolerance mechanisms matter.
  • copper ion transmembrane transport mitigates ROS-mediated oxidative damage METPO:2007407

    P1B-type ATPase copper efflux lowers cytoplasmic copper, reducing copper-driven oxidative toxicity.

    • DOI:10.3390/antibiotics12091474 Primary defense is active efflux via P1B-1 (P-type) ATPases; in Gram-negatives CopA pumps cytoplasmic Cu(I) to the periplasm, decreasing cytoplasmic copper toxicity.
  • periplasmic multicopper oxidase (CueO-type) enables Cu(I) to Cu(II) oxidation RO:0002327

    CueO-type periplasmic multicopper oxidase catalyzes oxidation of Cu(I) to Cu(II) in the presence of oxygen.

    • DOI:10.3390/antibiotics12091474 CueO oxidizes Cu(I) to less-toxic Cu(II) in oxygen; generalized periplasmic detox mechanism (aerobic context).
  • Cu(I) to Cu(II) oxidation mitigates copper(2+) ion METPO:2007407

    Oxidation of Cu(I) to less-toxic Cu(II) lowers the reactive copper burden in the periplasm.

    • DOI:10.3390/antibiotics12091474 Oxidation of Cu(I) to less-toxic Cu(II) reduces reactive-copper toxicity and ROS-mediated membrane damage.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1007/s10565-013-9262-1

Synonyms (1)

  • copper resistant RELATED_SYNONYM · DOI:10.1007/s10565-013-9262-1

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate ENVIRONMENT trait (copper tolerance) from literature research; metal-specific sub-variant of metal tolerant.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (cop/cue/cus/pco copper efflux) with CHEBI/GO node groundings and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 4 evidence-backed generic edges (3 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×2, biolink:causes×1, RO:0002327×1).