metal tolerant

traitmech:000012 · CLASS · REVIEWED

An environmental tolerance in which an organism grows in the presence of elevated concentrations of toxic heavy-metal or metalloid ions, typically via efflux-based resistance determinants (RND-family CBA pumps, P-type ATPases, and cation diffusion facilitators).

Metal tolerance via active efflux of heavy-metal ions

Evidence-backed causal sketch linking heavy-metal exposure to efflux-pump-mediated detoxification underlying broad metal tolerance.

Metal tolerance via active efflux of heavy-metal ions Interactive directed graph showing evidence-backed causal relationships for metal tolerant.

Edge evidence

  • toxic heavy-metal ion challenges metal tolerant METPO:2007406

    Elevated heavy-metal concentrations are the environmental challenge the trait counters.

    • DOI:10.3389/fmicb.2020.00047 Cupriavidus metallidurans encodes many metal-resistance determinants confronting multiple toxic metals.
  • metal efflux pump enables metal ion transmembrane export RO:0002327

    CBA pumps, P-type ATPases, and CDFs export toxic metal cations from the cytoplasm.

    • PMID:12829273 Nies reviews efflux-mediated heavy-metal resistance as the dominant prokaryotic tolerance mechanism.
  • metal ion transmembrane export enables metal tolerant RO:0002327

    Cytoplasmic detoxification by export realizes the metal-tolerant phenotype.

    • PMID:12829273 Nies frames efflux-based export as the basis of broad heavy-metal tolerance.
  • ArsC arsenate reductase converts arsenate As(V)

    ArsC arsenate reductase reduces As(V) to As(III) as the first detoxification step.

    • DOI:10.52700/jmmg.v5i1.155 Review: "ArsC converting As(V) to As(III) followed by extrusion"; general across bacteria.
  • arsenate As(V) is converted to arsenite As(III)

    Arsenate is reduced to arsenite, the species handled by efflux pumps.

    • DOI:10.52700/jmmg.v5i1.155 Review: ArsC converts As(V) to As(III) followed by extrusion.
  • ars operon enables arsenic tolerance RO:0002327

    The arsC + arsB/acr3 ars operon mediates arsenate reduction and arsenite extrusion conferring arsenic tolerance.

    • DOI:10.7717/peerj.18383 "a cooperative mechanism involving detoxification through arsenate reduction" via arsC/arsA/arsB/acr3 genes across mixed soil taxa.
  • arsenic tolerance is a metal tolerant rdfs:subClassOf

    Arsenic (metalloid) tolerance is a component of the broad metal-tolerant phenotype.

    • DOI:10.52700/jmmg.v5i1.155 Arsenic detoxification (reduction + efflux) is part of generic bacterial heavy-metal/metalloid resistance.
  • metal efflux pump mediates metal tolerant

    P-type ATPase, CDF, and RND efflux transporters mediate heavy-metal resistance in most bacteria.

    • DOI:10.52700/jmmg.v5i1.155 "resistance in most bacteria is mediated by P-type ATPase efflux, diffusion facilitator transporters of cations and RND" - generic review.

Provenance

Source
METPO (2025-11-25)
Definition source
PMID:12829273

Parent traits (1)

Synonyms (2)

  • metallophilic RELATED_SYNONYM · DOI:10.3389/fmicb.2020.00047
  • heavy metal resistant RELATED_SYNONYM · PMID:12829273

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate ENVIRONMENT trait (general heavy-metal/metalloid tolerance) from literature research to fill the metal-tolerance coverage gap. Parent of the metal-specific sub-variants.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (efflux-mediated metal detoxification) with GO node grounding and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A067YD12×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (5 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, rdfs:subClassOf×1).