zinc tolerant
traitmech:000014 · CLASS · REVIEWED
A metal tolerance in which an organism grows in the presence of elevated zinc (Zn2+) concentrations, typically via cation-efflux resistance systems such as the czc determinant.
Zinc tolerance via czc cation-efflux system
Edge evidence
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zinc(2+) ion
challenges
zinc tolerant
METPO:2007406Cytoplasmic zinc excess is the challenge the trait counters.
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DOI:10.3389/fmicb.2020.00047
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czc cation-efflux system
enables
zinc ion transmembrane transport
RO:0002327CzcP exports zinc together with cadmium and cobalt cations.
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DOI:10.1111/j.1365-2958.2009.06792.x
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zinc ion transmembrane transport
mitigates
zinc(2+) ion
METPO:2007407Czc-mediated export depletes the cytoplasmic zinc pool.
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DOI:10.1111/j.1365-2958.2009.06792.x
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ZntA P-type ATPase
exports
zinc(2+) ion
METPO:2000209ZntA PIB2-type ATPase effluxes cytoplasmic Zn(2+).
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DOI:10.1128/jb.00080-24
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ZntA P-type ATPase
promotes
zinc tolerant
RO:0002213ZntA-mediated efflux is causal for zinc resistance.
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DOI:10.1128/jb.00080-24
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zinc(2+) ion
upregulates
zntA transcription
Elevated zinc induces transcription of the zntA efflux gene.
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DOI:10.1128/jb.00299-24
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ZntR MerR-family regulator
required for
zntA transcription
ZntR is essential for zinc-responsive zntA expression.
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DOI:10.1128/jb.00299-24
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zntA transcription
results in
czc cation-efflux system
zntA transcription yields the ZntA efflux machinery.
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DOI:10.1128/jb.00299-24
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CzcCBA RND efflux complex
exports
zinc(2+) ion
METPO:2000209CzcCBA RND pump exports Zn(2+) from the periplasm.
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DOI:10.1128/jb.00080-24
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polyphosphate
contributes to
zinc ion buffering
RO:0002326Polyphosphate buffers cytoplasmic zinc, shaping flow equilibrium.
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DOI:10.1128/jb.00080-24
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glutathione
contributes to
zinc ion buffering
RO:0002326Glutathione buffers cytoplasmic zinc, shaping flow equilibrium.
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DOI:10.1128/jb.00080-24
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zinc ion buffering
mitigates
zinc(2+) ion
METPO:2007407Buffering lowers free cytoplasmic zinc.
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DOI:10.1128/jb.00080-24
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- PMID:12829273
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000059[-2.682, -2.070, -3.656, -0.652, …]
Nearest neighbors in embedding space
- environment cadmium tolerant 1.000
- morphology sulfur globule 1.000
- environment cobalt tolerant 1.000
- environment copper tolerant 1.000
- environment desiccation tolerant 1.000
- environment piezotolerant 1.000
- environment obligately piezophilic 1.000
- morphology gas vesicle 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate ENVIRONMENT trait (zinc tolerance) from literature research; metal-specific sub-variant of metal tolerant.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (czc zinc efflux) with CHEBI/GO node groundings and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:B0VPE1×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 9 evidence-backed generic edges (7 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 6 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000209×2, RO:0002326×2, RO:0002213×1, METPO:2007407×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16838×1).