zinc tolerant

traitmech:000014 · CLASS · REVIEWED

A metal tolerance in which an organism grows in the presence of elevated zinc (Zn2+) concentrations, typically via cation-efflux resistance systems such as the czc determinant.

Zinc tolerance via czc cation-efflux system

Evidence-backed causal sketch linking the cobalt-zinc-cadmium (czc) efflux determinant to cytoplasmic zinc detoxification.

Zinc tolerance via czc cation-efflux system Interactive directed graph showing evidence-backed causal relationships for zinc tolerant.

Edge evidence

  • zinc(2+) ion challenges zinc tolerant METPO:2007406

    Cytoplasmic zinc excess is the challenge the trait counters.

    • DOI:10.3389/fmicb.2020.00047 Cupriavidus metallidurans BS1 tolerates Zn(2+) to a MIC of 20 mM.
  • czc cation-efflux system enables zinc ion transmembrane transport RO:0002327

    CzcP exports zinc together with cadmium and cobalt cations.

    • DOI:10.1111/j.1365-2958.2009.06792.x CzcP exports transition metals Zn(2+), Cd(2+), and Co(2+).
  • zinc ion transmembrane transport mitigates zinc(2+) ion METPO:2007407

    Czc-mediated export depletes the cytoplasmic zinc pool.

    • DOI:10.1111/j.1365-2958.2009.06792.x The czc efflux system of C. metallidurans confers zinc resistance.
  • ZntA P-type ATPase exports zinc(2+) ion METPO:2000209

    ZntA PIB2-type ATPase effluxes cytoplasmic Zn(2+).

    • DOI:10.1128/jb.00080-24 Efflux of zinc ions is mediated by the PIB2-type ATPase, ZntA.
  • ZntA P-type ATPase promotes zinc tolerant RO:0002213

    ZntA-mediated efflux is causal for zinc resistance.

    • DOI:10.1128/jb.00080-24 Deletion of PIB2 ATPases sharply lowers IC50 (to 7.7 uM), showing their causal role in resistance.
  • zinc(2+) ion upregulates zntA transcription

    Elevated zinc induces transcription of the zntA efflux gene.

    • DOI:10.1128/jb.00299-24 At external zinc concentrations above 200 nM expression of the zntA gene is upregulated.
  • ZntR MerR-family regulator required for zntA transcription

    ZntR is essential for zinc-responsive zntA expression.

    • DOI:10.1128/jb.00299-24 ZntR was essential for zntA expression.
  • zntA transcription results in czc cation-efflux system

    zntA transcription yields the ZntA efflux machinery.

    • DOI:10.1128/jb.00299-24 Increased zntA expression provides ZntA exporter under zinc excess.
  • CzcCBA RND efflux complex exports zinc(2+) ion METPO:2000209

    CzcCBA RND pump exports Zn(2+) from the periplasm.

    • DOI:10.1128/jb.00080-24 The plasmid-encoded RND transenvelope pump CzcCBA exports Co(II), Zn(II), and Cd(II).
  • polyphosphate contributes to zinc ion buffering RO:0002326

    Polyphosphate buffers cytoplasmic zinc, shaping flow equilibrium.

    • DOI:10.1128/jb.00080-24 Metal-binding cytoplasmic components polyphosphate and glutathione influenced the flow equilibrium.
  • glutathione contributes to zinc ion buffering RO:0002326

    Glutathione buffers cytoplasmic zinc, shaping flow equilibrium.

    • DOI:10.1128/jb.00080-24 Polyphosphate and glutathione influenced the flow equilibrium.
  • zinc ion buffering mitigates zinc(2+) ion METPO:2007407

    Buffering lowers free cytoplasmic zinc.

    • DOI:10.1128/jb.00080-24 Cytoplasmic buffering components influence the zinc flow equilibrium.

Provenance

Source
METPO (2025-11-25)
Definition source
PMID:12829273

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate ENVIRONMENT trait (zinc tolerance) from literature research; metal-specific sub-variant of metal tolerant.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (czc zinc efflux) with CHEBI/GO node groundings and RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:B0VPE1×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 9 evidence-backed generic edges (7 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 6 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000209×2, RO:0002326×2, RO:0002213×1, METPO:2007407×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16838×1).