fungal chlamydospore formation
traitmech:000658 · CLASS · PROPOSED
A morphological phenotype in which a fungus forms enlarged, thick-walled cells called chlamydospores.
Trait evidence
-
DOI:10.1038/s41467-020-20010-9Chlamydospores are enlarged thick-walled cells produced within hyphae or at hyphal tips
-
DOI:10.1099/13500872-141-7-1507These organisms were germ-tube-positive and produced abundant chlamydospores which were frequently arranged in triplets or in contiguous pairs.
-
DOI:10.3389/fmicb.2016.01697Both species produced typically high amounts of chlamydospores on rice and CM agar (chlamydospore index [CI] 3).
-
DOI:10.1111/j.1567-1364.2009.00533.xMycelium-attached and purified chlamydospores rapidly lost their viability in water and when subjected to dry stress
-
https://research.fs.usda.gov/treesearch/30277Cell walls of mature P. ramorum chlamydospores are thicker than reported for other Phytophthora species, although thin-walled chlamydospores are also formed.
-
DOI:10.1007/s10886-012-0171-1two species of Fusarium formed chlamydospores from hyphae, germ tubes, or inside the conidia within 2 days.
Provenance
- Identifier source
- TraitMech local identifier
- Definition source
DOI:10.1038/s41467-020-20010-9
Parent traits (1)
kg-microbe context
No kg-microbe node embedding matched this record in the 2026-04-25 deepwalk.
Canonical examples
-
Candida dubliniensis
NCBITaxon:42374DOI:10.1099/13500872-141-7-1507
Discussions and Knowledge Gaps
Resolve conidiation, dormancy and process-ontology mappings.
Retain phenotype METPO:1000059. Sporulation METPO:1000870 and spore forming METPO:1000871 explicitly concern endospores. Citiulo et al. (2009) call Candida chlamydospore budding blastic conidiogenesis; that source-attributed usage does not settle whether this broader fungal class should be below fungal conidiation traitmech:000657. Do not equate it with ordinary pseudohyphal growth or any hyphal swelling. Closed upstream issue https://github.com/berkeleybop/metpo/issues/67 suggested chlamydospores under resting spores; the Candida viability evidence does not support that as a universal function. GO:0001410 was resolved through QuickGO: it is a biological process and its survival/endogenous-formation wording also needs scope review. Leave exact synonyms and xrefs unset rather than asserting equivalence. The four obsolete METPO chlamydospore terms are material classes, not active organismal phenotypes.
Separate morphological identification from survival and regulation.
Wall thickening alone does not establish long-term survival, dormancy, infectivity or a dispersal function. Preserve species-, strain-, age- and medium-specific endpoints. Do not require one arrangement, nucleus count, nutrient trigger or illumination regime. The USDA Phytophthora report documents a nonfungal terminology boundary, not additional fungal replication. Formation and later germination are different observations. A causal graph is deferred pending reconciliation of primary perturbations and supplementary strain identities with natural-host provenance and taxon-paired protein accessions. Gene possession alone is not a chlamydospore phenotype. Li et al. (2012), PMID:22932866, report formation inside conidia as well as from hyphae and germ tubes under the tested treatment. Issue #1772 corrected the initial hypha-only restriction; retain formation-site neutrality and do not promote the separately reported chlamydospore-like structures to confirmed chlamydospores.
Curation history
-
·
MINTED_TRAITMECH_ID · codex
Added fungal chlamydospore formation with five directly checked snippets, a cohort-qualified Candida dubliniensis example and explicit terminology, hierarchy and function limits. Ignored-and-hidden searches found no exact live record. Reserved METPO:1061100 in v534; existing records unchanged and causal graph deferred.
-
·
REVISED_DEFINITION · codex
Addressed #1772: removed the hypha-only formation-site restriction, added the primary Fusarium conidial-route counterexample and retained treatment and source-access limits. Preserve the initial curation event and canonical example.
Recorded curation sessions
-
· codex
- CREATE — Add evidence-backed fungal chlamydospore formation
Minted traitmech:000658 with four DOI-backed studies, a stable-URL terminology boundary, five directly checked snippets, a cohort-qualified Candida dubliniensis canonical example and two open scope/function discussions. Reserved METPO:1061100 in v534. Preserve Candida viability limits and source-attributed conidiation/resting-spore terminology without imposing universal dormancy. Existing records unchanged; causal graph deferred.
- CREATE — Add evidence-backed fungal chlamydospore formation
-
· codex
- EDIT — Remove hypha-only chlamydospore formation restriction
Addressed #1772 with directly retrieved Li et al. 2012 evidence, DOI:10.1007/s10886-012-0171-1, PMID:22932866: Fusarium can form chlamydospores inside conidia under the tested treatment. Broadened the definition, added a sixth exact snippet and source-access/treatment limits, and preserved the initial curation event and canonical example. The earlier CREATE record 2026-10-07T042707Z-codex-070b8d.yaml remains unchanged; this EDIT documents its pre-merge scope correction. Interrupted pre-fix validation is not counted as a successful final run.
- EDIT — Remove hypha-only chlamydospore formation restriction