HabitatMech

sponge-associated environment

habitatmech:GOLD.64acf9132c ·HOST_ASSOCIATED ·UNGROUNDED REVIEWED

An animal-associated environment which is determined by a sponge. — HabitatMech

Source attestations

Each upstream vocabulary's own account of this habitat. Assertion counts are per-source units and are not comparable across sources — GOLD counts organisms, BacDive strains, PREGO taxa.

What each upstream vocabulary says about this habitat
SourceLabel / pathAssertionsUnit
BACDIVE Porifera-Sponges
Upstream mapping targets a non-habitat ontology (NCBITaxon:6040); the curated decision deliberately does not carry that partial mapping onto the generated record.
86 STRAIN
GOLD Host-associated > Porifera
4 GOLD ecosystem node ids share this path; first shown. See data/raw/gold_ecosystem_paths.tsv.
90 ORGANISM
GOLD Host-associated > Porifera > Sponge
3 GOLD ecosystem node ids share this path; first shown. See data/raw/gold_ecosystem_paths.tsv.
323 ORGANISM

Broader habitats

Associated taxa

Taxa reported from this habitat, which is weaker than being characteristic of it. rank is out of pool: a high rank in a pool of thousands of near-tied scores is a weak claim. Entries corroborated by a second, independent source are listed first.

Taxa reported from this habitat
TaxonSourceRankPoolCorroborated
Rheinheimera sp. NCBITaxon:1869214 BACDIVE 1 83
Lacinutrix sp. NCBITaxon:1937692 BACDIVE 2 83
Pseudoalteromonas distincta NCBITaxon:77608 BACDIVE 3 83
Aquimarina amphilecti NCBITaxon:1038014 BACDIVE 4 83
Planococcus plakortidis NCBITaxon:1038856 BACDIVE 5 83
Tenacibaculum mesophilum NCBITaxon:104268 BACDIVE 6 83
Cobetia amphilecti NCBITaxon:1055104 BACDIVE 7 83
Nocardioides marmoraquaticus NCBITaxon:1087253 BACDIVE 8 83
Williamsia spongiae NCBITaxon:1087277 BACDIVE 9 83
Afifella marina DSM 2698 NCBITaxon:1120955 BACDIVE 10 83
Lysobacter spongiicola DSM 21749 NCBITaxon:1122188 BACDIVE 11 83
Rubritalea marina DSM 17716 NCBITaxon:1123070 BACDIVE 12 83
Rubritalea squalenifaciens DSM 18772 NCBITaxon:1123071 BACDIVE 13 83
Endozoicomonas numazuensis NCBITaxon:1137799 BACDIVE 14 83
Luteivirga sdotyamensis NCBITaxon:1182408 BACDIVE 15 83
Fulvitalea axinellae NCBITaxon:1182444 BACDIVE 16 83
Aureivirga marina NCBITaxon:1182451 BACDIVE 17 83
Maribacter spongiicola NCBITaxon:1206753 BACDIVE 18 83
Maribacter vaceletii NCBITaxon:1206816 BACDIVE 19 83
Micromonospora andamanensis NCBITaxon:1287068 BACDIVE 20 83
Nocardia xestospongiae NCBITaxon:1522140 BACDIVE 21 83
Actinoalloteichus fjordicus NCBITaxon:1612552 BACDIVE 22 83
Geodermatophilus marinus NCBITaxon:1663241 BACDIVE 23 83
Streptomyces spongiicola NCBITaxon:1690221 BACDIVE 24 83
Saccharopolyspora spongiae NCBITaxon:1847949 BACDIVE 25 83

Related terms

Terms a source linked to this concept without this record claiming to be one of them, or to be narrower than one. A cross-reference, not a grounding.

Also called

Curation

What a curator decided about this record, and why. A record built from several source concepts can carry one decision per concept.

  1. CONFIRM_UNGROUNDED 2026-08-16 · claude-opus-5

    Confirmed UNGROUNDED: no ontology term fits this concept. NCBITaxon:6040 'Porifera' kept as an xref. Host-taxon reversal (#114): this was NOT_APPLICABLE on the reasoning that 'a host taxon is not a habitat'. That reasoning is wrong, and the corpus already contradicted it — the same kind of concept was treated as a habitat for Sponge, Nematoda, Reptilia, Mammals, Birds and Fish, which keep their own identity and a term request for an <X>-associated environment. Host-associated > Porifera was NOT_APPLICABLE while its own child Porifera > Sponge was a term request.An organism acting as a host IS a habitat: it is where the microbe lives, and ENVO models exactly this at plant-associated, animal-associated and fungi-associated environment. What is not a habitat is the TAXON TERM — a phylum is a class of organisms, not a place — so the taxon stays an xref (#99) and the concept keeps its own identity as a term-request candidate. NOT_APPLICABLE said the concept is not a habitat, which is a stronger and false claim. (source concept habitatmech:GOLD.64acf9132c)

  2. SAME_AS 2026-08-21 · codex-gpt-5

    Merged into habitatmech:GOLD.64acf9132c 'Porifera': the same concept under another source's name. Adversarial review follow-up (#158): GOLD's Host-associated > Porifera > Sponge and Host-associated > Porifera name the same sponge host concept. Keeping both produced two HabitatMech records with the same curated label but conflicting parents and definitions, while the ROBOT export silently collapsed them. Merge onto the Porifera identifier because its curated definition uses the more specific existing parent ENVO:01001176 environment associated with an aquatic invertebrate. Both GOLD attestations remain on the merged record. (source concept habitatmech:GOLD.affd2445ea)

  3. SAME_AS 2026-08-28 · claude-opus-5

    Merged into habitatmech:GOLD.64acf9132c 'sponge-associated environment': the same concept under another source's name. Novel-concept merge (#116) found while authoring definitions from the committed research report (#110): BacDive's 'Porifera-Sponges' and the GOLD survivor are the same habitat - a sponge acting as host - and the GOLD record already carries the authored definition 'sponge-associated environment' over 413 assertions. The report reached the same conclusion independently, recommending that one term request cover all three source concepts rather than being filed three times. Writing a second definition here would have been rejected by the duplicate-requested_label rule (#161), and correctly so: this is a genuine duplicate, not a path-distinguished leaf. Do not sum the 86 BacDive strains with the GOLD organism counts - different assertion_unit. (source concept habitatmech:BACDIVE.18f9382d8d)

  4. DEFINED 2026-09-02 · claude-opus-5

    Defined as 'sponge-associated environment' under ENVO:01001002 'animal-associated environment'. Definition drafted from the record's deep-research report under research/habitats/ and read against it; the report's proposed wording, genus and near-miss table are the evidence. Parented to the aquatic-invertebrate term rather than to animal-associated environment, which the report identified as the more specific existing genus. Genus moved from ENVO:01001176 'environment associated with an aquatic invertebrate' to ENVO:01001002 (#210), with the whole aquatic-invertebrate host family rather than record by record - #210 was filed over three records and the genus is actually held by five, so fixing only the three would have rebuilt the same split it reports. Both terms are true of the concept, so this chooses between two true genera on what each drags in: ENVO asserts ENVO:01001176 under ENVO:01001002 AND ENVO:01001055 'environment associated with an animal part or small animal', so the tighter genus makes every descendant inherit a size-and-partonomy restriction that is false of a whole adult sponge, ascidian, oyster, giant clam or sea urchin. ENVO's own modelling is the decisive evidence: ENVO:01001179 'cnidarian-associated environment' - the closest analogue, a taxon-scoped class over aquatic invertebrates - is asserted under ENVO:01001002 ALONE, and ENVO:01001176 has no children in the slice at all. Not carried as an xref: it is genuinely broader, so recording it would re-import the ancestry this declines.

Provenance

Generated by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.