manganese oxidation

traitmech:000032 · CLASS · REVIEWED

A metabolism in which bacteria oxidize soluble Mn(II) to insoluble Mn(III/IV) oxides, typically catalyzed by multicopper oxidases. Characteristic of organisms such as Bacillus sp. SG-1, Leptothrix, and Pseudomonas putida.

Manganese oxidation produces insoluble Mn(III/IV) oxides

Evidence-backed causal sketch linking multicopper-oxidase activity to oxidation of soluble Mn(II) to insoluble Mn(III/IV) oxides.

Manganese oxidation produces insoluble Mn(III/IV) oxides Interactive directed graph showing evidence-backed causal relationships for manganese oxidation.

Edge evidence

  • multicopper oxidase enables manganese oxidation RO:0002327

    Multicopper oxidases catalyze the Mn(II) → Mn(III/IV) oxidation step.

    • DOI:10.1016/j.tim.2005.07.009 Tebo et al. support bacterial Mn(II) oxidation via a multicopper- oxidase mechanism.
  • manganese oxidation produces Mn(III/IV) oxides METPO:2000202

    The metabolism deposits biogenic Mn(III/IV) oxides.

    • DOI:10.1146/annurev.earth.32.101802.120213 Tebo et al. characterize the formation and properties of bacterially produced Mn(III/IV) oxides.
  • molecular oxygen (O2) enables manganese oxidation RO:0002327

    O2 serves as the direct oxidant enabling multicopper-oxidase-mediated Mn(II) oxidation.

    • DOI:10.1021/jacs.3c06537 Some microbes can use O2 directly via multicopper oxidase (MCO) enzymes for Mn(II) oxidation.
  • manganese oxidation produces Mn(III)(OH)Mn(III) intermediate METPO:2000202

    A cooperative two-electron oxidation step produces a Mn(III)(OH)Mn(III) intermediate.

    • DOI:10.1021/jacs.3c06537 Cryo-EM mechanistic model: a cooperative two-electron step producing a Mn(III)(OH)Mn(III) intermediate.
  • Mn(III)(OH)Mn(III) intermediate disproportionates to form Mn(IV)(O)Mn(IV) intermediate

    Two Mn(III)(OH)Mn(III) species disproportionate to form Mn(IV)(O)Mn(IV).

    • DOI:10.1021/jacs.3c06537 Disproportionation of two Mn(III)(OH)Mn(III) species to form Mn(IV)(O)Mn(IV).
  • Mn(IV)(O)Mn(IV) intermediate condenses into MnO2 nanoparticles

    Mn(IV)(O)Mn(IV) condenses en route to MnO2 nanoparticle release.

    • DOI:10.1021/jacs.3c06537 Mn(IV)(O)Mn(IV) is en route to MnO2, with release of MnO2 nanoparticles.
  • MnO2 nanoparticles is a Mn(III/IV) oxides rdfs:subClassOf

    MnO2 nanoparticles are a form of the insoluble biogenic Mn(III/IV) oxide product.

    • DOI:10.1021/jacs.3c06537 MnO2 nanoparticles are the final insoluble Mn(IV) oxide biomineral product of the oxidation cascade.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1016/j.tim.2005.07.009

Parent traits (1)

Synonyms (1)

  • Mn(II) oxidation EXACT_SYNONYM · DOI:10.1016/j.tim.2005.07.009

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000060 [-1.052, -1.766, -1.194, +0.291, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate METABOLISM trait (manganese oxidation) from literature research to fill the metal-redox metabolism gap.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (multicopper-oxidase Mn(II) → Mn(III/IV) oxidation) with RO/METPO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A059ZYC2×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (4 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, METPO:2000202×1, rdfs:subClassOf×1).