cell length very small

METPO:1000883 · CLASS · REVIEWED

A cell-length phenotype in which the longer cell dimension is at most approximately 1.3 micrometers.

Very-small cell-length streamlining

DOI-backed graph linking strong nutrient limitation and streamlining selection to very-small cell length (≤1.3 μm).

Very-small cell-length streamlining Interactive directed graph showing evidence-backed causal relationships for cell length very small.

Edge evidence

  • oligotrophic environment regulates streamlining selection RO:0002211

    Persistent oligotrophy selects for streamlined cells and genomes.

    • DOI:10.1038/ismej.2014.60 small cells and genomes Supports oligotrophic regimes as drivers of cell miniaturization.
  • streamlining selection produces cell length very small METPO:2000202

    Streamlining selection produces very small cell length values.

    • DOI:10.1038/ismej.2014.60 small cells Supports very small length as an outcome of streamlining selection.
  • cell length very small is a cell length rdfs:subClassOf

    Very small cell length is a quantitative bin of the cell-length phenotype.

    • DOI:10.1016/j.cub.2014.07.022 cell size is tightly controlled Supports very small cell length as a value within the regulated cell-length distribution.
  • oligotrophic environment selects for genome streamlining METPO:2007401

    Oligotrophic environments select for genome streamlining.

    • DOI:10.1128/mSphereDirect.00011-19 Genome streamlining is characterized by small cells (~1 um), small genomes (~1-2 Mbp), and is strongly associated with carbon and nitrogen limitation.
  • carbon limitation associated with genome streamlining biolink:associated_with

    Carbon limitation is associated with genome streamlining.

    • DOI:10.1128/mSphereDirect.00011-19 Streamlining is strongly associated with carbon and nitrogen limitation.
  • nitrogen limitation associated with genome streamlining biolink:associated_with

    Nitrogen limitation is associated with genome streamlining.

    • DOI:10.1128/mSphereDirect.00011-19 Streamlining is strongly associated with carbon and nitrogen limitation.
  • genome streamlining contributes to cell length very small RO:0002326

    Genome streamlining contributes to very small cell size.

    • DOI:10.1038/s41467-024-48591-9 Prominent oligotrophic taxa (SAR11, Prochlorococcus) have streamlined genomes (~1.5 Mb) and extremely small cell volumes (~0.1 um3).
  • reduced transcriptional regulation enhances fitness in nutrient-poor environment

    Reduced transcriptional regulation enhances fitness in nutrient-poor environments, a companion of streamlining.

    • DOI:10.1128/MMBR.00124-22 A reduction of transcriptional regulation in aquatic oligotrophic microorganisms enhances fitness in nutrient-poor environments.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1038/ismej.2014.60

Parent traits (1)

Synonyms (1)

  • L_<=1.3 RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000883 [-1.058, -2.584, -0.836, +2.454, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking oligotrophic streamlining selection to very small cell length.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, rdfs:subClassOf×1).

  4. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: drives → regulates ×1.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  6. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (5 new nodes) from the deep-research report.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:associated_with×2, METPO:2007401×1, RO:0002326×1).