animal pathogen

METPO:1004002 · CLASS · REVIEWED

A pathogen that infects organisms in the kingdom Metazoa.

Animal-pathogen metazoan host adaptation

DOI-backed graph linking metazoan-adapted virulence factors, immune-evasion strategies, and animal-tissue colonization to the animal-pathogen phenotype.

Animal-pathogen metazoan host adaptation Interactive directed graph showing evidence-backed causal relationships for animal pathogen.

Edge evidence

  • metazoan-adapted virulence factors enables animal tissue colonization RO:0002327

    Metazoan-adapted virulence factors enable adhesion and invasion of animal tissues.

    • DOI:10.1146/annurev.micro.62.081307.162938 virulence factors Supports virulence factors as enablers of animal tissue colonization.
  • immune evasion enables animal tissue colonization RO:0002327

    Immune evasion supports sustained colonization despite host defenses.

    • DOI:10.1038/nrmicro1592 secretion systems Supports effector-delivery-based immune evasion in animal pathogens.
  • animal tissue colonization causes animal disease biolink:causes

    Established colonization in animal tissues causes disease.

    • DOI:10.1146/annurev.micro.62.081307.162938 virulence factors Supports colonization-to-disease progression in animal hosts.
  • animal disease manifests as animal pathogen METPO:2007400

    Animal disease manifests the animal-pathogen trait.

    • DOI:10.1146/annurev.micro.62.081307.162938 virulence factors Supports the trait endpoint.
  • bacterial adhesins enables attachment to host cells and mucosa RO:0002327

    Bacterial adhesins enable attachment to host cells, extracellular matrix, and mucosa.

    • DOI:10.1093/femsre/fuae019 Expression of bacterial surface adhesins is critical for adherence to host tissues; common colonization mechanism across body sites.
  • attachment to host cells and mucosa enables animal tissue colonization RO:0002327

    Attachment to host surfaces initiates colonization of metazoan barrier sites.

    • DOI:10.1093/femsre/fuae019 Colonization of metazoan barrier sites commonly begins with adhesion to host surfaces.
  • complement-regulator-binding surface proteins mediates complement evasion

    Surface proteins binding host complement regulators (factor H, C4BP) mediate complement evasion.

    • DOI:10.1093/femsre/fuae019 Surface proteins in diverse bacterial pathogens bind fH and C4BP to mediate evasion of complement proteins.
  • complement evasion enables immune evasion RO:0002327

    Complement evasion contributes to overall evasion of host immunity.

    • DOI:10.1093/femsre/fuae019 Complement evasion is a major determinant shaping immune resistance in animal pathogens.
  • type III secretion system enables effector delivery into host-cell cytoplasm RO:0002327

    T3SS injectisomes deliver effector proteins directly into the host-cell cytoplasm.

    • DOI:10.1128/spectrum.02224-23 T3SSs form syringe-like structures allowing effector proteins to be delivered from bacteria into the host-cell cytoplasm.
  • effector delivery into host-cell cytoplasm enables immune evasion RO:0002327

    T3SS effector delivery modulates host cells and supports immune evasion.

    • DOI:10.1128/spectrum.02224-23 Effector delivery into host cytoplasm is a canonical virulence mechanism subverting host defenses.
  • type IV secretion system enables effector/toxin translocation into target cells RO:0002327

    T4SS nanomachines translocate protein effectors or toxins into target cells.

    • DOI:10.1038/s41579-023-00974-3 Many T4SSs have acquired functionalities relating to translocation of effector proteins or toxins, supporting host-pathogen interactions.
  • effector/toxin translocation into target cells enables animal tissue colonization RO:0002327

    T4SS effector/toxin translocation supports host-pathogen interactions and colonization.

    • DOI:10.1038/s41579-023-00974-3 T4SSs are versatile nanomachines central to host-pathogen interactions.
  • low-iron host environment enables siderophore biosynthesis gene expression RO:0002327

    Low iron derepresses Fur, enabling siderophore biosynthesis gene expression.

    • DOI:10.1039/d4cb00175c When iron decreases, Fur releases Fe2+ allowing siderophore biosynthesis gene expression.
  • TonB-dependent transporters enables siderophore-Fe3+ complex import RO:0002327

    TonB-dependent transporters import siderophore-Fe3+ complexes into the periplasm.

    • DOI:10.1039/d4cb00175c Siderophore-Fe3+ complexes are imported via TonB-dependent transporters into the periplasm.
  • siderophore-Fe3+ complex import enables animal tissue colonization RO:0002327

    Iron acquisition via siderophore uptake supports growth in iron-restricted host tissues.

    • DOI:10.1039/d4cb00175c Iron scavenging uptake is central to nutrient acquisition in host environments.

Knowledge gaps & discussions (1)

KNOWLEDGE_GAP OPEN Knowledge gap for animal pathogen: Prokaryotes in such plastispheres are unknown to date.

Surfaced by the Europe PMC literature gap-signal scan (categories: controversy_conflict, explicit_gap, limitations_barriers, unclear_unknown). Curator review required: set attaches_to, refine the prompt, and weigh the cited evidence.

4 evidence item(s)
NO_EVIDENCE PMID:40891913 Prokaryotes in such plastispheres are unknown to date. Gap-signal sentence (unclear_unknown) from the cited abstract.
NO_EVIDENCE PMID:42279816 However, in South America, their use is still limited because of complicated regulations and inconsistent evidence requirements. Gap-signal sentence (controversy_conflict) from the cited abstract.
NO_EVIDENCE PMID:41639266 However, the interacting effects of climate factors and seasonal variations in nutritional components on PMCs remain poorly understood. Gap-signal sentence (unclear_unknown) from the cited abstract.
NO_EVIDENCE PMID:42197358 While plant growth-promoting bacteria (PGPB) are known to alleviate heavy metal toxicity, their role under MP-HM co-contamination and the differential responses of rhizosphere microbial communities remain unclear. Gap-signal sentence (unclear_unknown) from the cited abstract.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev.micro.62.081307.162938

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1004002 [-1.564, -64.092, -0.620, -28.964, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking metazoan-adapted virulence factors, immune evasion, animal tissue colonization, and disease to the animal-pathogen trait.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  6. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: supports → enables ×1.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  8. · REMOVE_REDUNDANT_SYNONYM · claude

    Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).

  9. · ENRICH_CAUSAL_GRAPH · claude

    Added 11 evidence-backed generic edges (12 new nodes) from the deep-research report.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 10 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×10).