sporulation
METPO:1000870 · CLASS · REVIEWED
A phenotype that is relating to an organism's ability to form dormant, stress-resistant endospores.
Sporulation Spo0A and sigma-factor morphogenesis
Edge evidence
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nutrient limitation
activates
Spo0A phosphorelay
RO:0002213Starvation and stress signals feed into Spo0A activation.
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DOI:10.1016/S1369-5274(00)00141-7steps that lead to activation of Spo0A
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Spo0A phosphorelay
initiates
asymmetric septation
Spo0A-dependent transcription initiates the morphological program that includes asymmetric septation.
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DOI:10.1146/annurev.genet.30.1.297activation of these sigma factors to landmark events in morphogenesis
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asymmetric septation
establishes
compartment-specific sigma factors
Asymmetric septation establishes mother-cell and forespore compartments with distinct sigma-factor programs.
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DOI:10.1128/MMBR.67.4.526-560.2003Compartmentalization of Gene Expression
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compartment-specific sigma factors
regulates
forespore maturation
RO:0002211Sequential sigma-factor activity drives forespore development.
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DOI:10.1128/MMBR.67.4.526-560.2003forespore- and mother cell-specific transcription factors
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forespore maturation
produces
endospore
METPO:2000202Forespore maturation produces a dormant endospore.
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DOI:10.1146/annurev.genet.30.1.297within which a spore is produced
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endospore
manifests as
sporulation
METPO:2007400Endospore production manifests the sporulation phenotype.
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DOI:10.1038/nrmicro2921production of a highly resistant dormant cell type known as the spore
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asymmetric septation
produces
mother cell and forespore
METPO:2000202Asymmetric division produces distinct mother-cell and forespore compartments.
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DOI:10.1038/s41467-024-51654-6
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SpoIIIE
mediates
chromosome translocation
SpoIIIE translocates the chromosome into the forespore after asymmetric septation.
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DOI:10.1038/s41467-024-51654-6
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forespore engulfment
creates
cell-within-a-cell state
biolink:producesEngulfment of the forespore by the mother cell creates a cell-within-a-cell state.
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DOI:10.1038/s41467-024-51654-6
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sigma F
activates
sigma E
RO:0002213Forespore sigma F drives activation of mother-cell sigma E.
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DOI:10.1016/j.jbc.2024.107905
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sigma G
drives
spore DNA protection
Late forespore sigma G drives spore DNA protection during maturation.
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DOI:10.1038/s41467-024-51654-6
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sigma K
controls
spore coat and cortex
RO:0002211Mother-cell sigma K controls spore coat and cortex maturation.
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DOI:10.1038/s41467-024-51654-6
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spore coat and cortex
confers
heat and chemical resistance
Deposition of cortex, coat and exosporium confers heat and chemical resistance.
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DOI:10.1038/s42003-024-06521-x
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1146/annurev.genet.30.1.297
Parent traits (1)
Synonyms (2)
- General.keywords
- Physiology and metabolism.spore formation.spore formation
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000870[-1.554, -2.668, -2.202, -0.616, …]
Nearest neighbors in embedding space
- morphology motility 0.840
- physiology oxidase activity 0.829
- morphology gas vesicle 0.829
- physiology chemotaxis 0.829
- environment metal tolerant 0.829
- physiology dormancy 0.829
- environment mercury tolerant 0.829
- environment ionizing radiation tolerant 0.829
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_LITERATURE · codex
Added DOI-backed definition and causal graph for nutrient limitation, Spo0A phosphorelay, asymmetric septation, compartment sigma factors, forespore maturation, and endospore formation.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).
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RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: drives → regulates ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×1).
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REMOVE_REDUNDANT_SYNONYM · claude
Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).
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ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (12 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1, biolink:produces×1, RO:0002213×1, RO:0002211×1).
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GROUND_CAUSAL_NODES · claude
Grounded 4 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A100JQQ1×1, UniProtKB:E0J3M3×1, UniProtKB:A0A0C7NZS0×1, UniProtKB:A0A060N640×1).