oxidase activity

traitmech:000076 · CLASS · REVIEWED

A physiological enzyme-activity phenotype in which a cell produces a terminal respiratory oxidase (notably cytochrome c oxidase); it is the basis of the diagnostic oxidase test.

Terminal respiratory oxidase reducing oxygen

Evidence-backed causal sketch linking a terminal respiratory oxidase to reduction of molecular oxygen, the basis of the oxidase test.

Terminal respiratory oxidase reducing oxygen Interactive directed graph showing evidence-backed causal relationships for oxidase activity.

Edge evidence

  • cytochrome c oxidase enables cytochrome-c oxidase activity RO:0002327

    Cytochrome c oxidase carries out terminal oxidase activity.

    • DOI:10.3390/microorganisms10050926 Hederstedt reviews bacterial cytochrome c oxidase.
  • cytochrome-c oxidase activity consumes molecular oxygen biolink:consumes

    The terminal oxidase reduces molecular oxygen to water.

    • DOI:10.1089/ars.2020.8039 Borisov et al. review terminal oxidases that reduce O2.
  • cytochrome c oxidase enables oxidase activity RO:0002327

    Possession of a terminal oxidase confers the oxidase-activity phenotype.

    • DOI:10.3390/microorganisms10050926 Supports the oxidase-test basis.
  • reduced cytochrome c donates electrons to CuA center METPO:2007403

    Reduced cytochrome c donates electrons to the CuA center of subunit II.

    • DOI:10.3390/microorganisms10050926 Hederstedt: "reduced cytochrome c donates electrons to the CuA center in subunit II."
  • CuA center transfers electrons to heme a METPO:2007403

    The CuA center relays electrons to low-spin heme a.

    • DOI:10.3390/microorganisms10050926 Hederstedt: electrons pass from CuA "then to low-spin heme a."
  • heme a3-CuB binuclear center reduces molecular oxygen METPO:2000017

    The heme a3-CuB binuclear center reduces molecular oxygen to water.

    • DOI:10.3390/microorganisms10050926 Hederstedt: "the dioxygen reduction site (heme a3 + CuB)."
  • family A cytochrome c oxidase has cofactor heme a

    Family A cytochrome c oxidase contains two heme A prosthetic groups (heme a and heme a3).

    • DOI:10.3390/microorganisms10050926 Hederstedt: "contains two heme A prosthetic groups (heme a and heme a3)."
  • family A cytochrome c oxidase has cofactor CuA/CuB copper centers

    Family A cytochrome c oxidase carries three copper atoms in CuA and CuB centers.

    • DOI:10.3390/microorganisms10050926 Hederstedt: "three copper atoms (CuA is di-copper in subunit II; CuB in subunit I)."
  • carbon monoxide inhibits cytochrome-c oxidase activity RO:0002212

    Carbon monoxide is a potent inhibitor of heme-copper cytochrome c oxidase activity.

    • DOI:10.3390/ijms26062809 Borisov & Forte 2025: "CO is a potent inhibitor of heme-copper cytochrome c oxidase (Ki ~0.3 uM)."

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.3390/microorganisms10050926

Parent traits (1)

Synonyms (1)

  • oxidase-positive RELATED_SYNONYM · DOI:10.3390/microorganisms10050926

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate PHYSIOLOGY trait (oxidase activity) from literature research to fill the enzyme-activity-phenotype gap.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (terminal oxidase reducing O2) with GO/CHEBI node groundings and RO/biolink predicate groundings; promoted PROPOSED to REVIEWED.

  3. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A075NZN5×1).

  4. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007403×2, METPO:2000017×1, RO:0002212×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:17245×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:16928×1, CHEBI:24479×1).