pathogenic to host
METPO:1004000 · CLASS · REVIEWED
A phenotype where a microbe is a pathogen of some host organism.
Pathogenic-to-host virulence-factor program
Edge evidence
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virulence factors
enables
host colonization
RO:0002327Virulence factors enable adhesion, immune evasion, and tissue invasion required for host colonization.
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DOI:10.1146/annurev.micro.62.081307.162938virulence factors
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protein secretion systems
delivers
virulence factors
Bacterial protein secretion systems deliver effector virulence factors into host environments or host cells.
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DOI:10.1038/nrmicro1592secretion systems
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host colonization
enables
host damage
RO:0002327Established host colonization enables sustained damage to host tissues.
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DOI:10.1146/annurev.micro.62.081307.162938virulence factors
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host damage
manifests as
pathogenic to host
METPO:2007400Host damage manifests the pathogenic-to-host trait.
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DOI:10.1146/annurev.micro.62.081307.162938virulence factors
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quorum sensing autoinducers
activates
virulence gene expression
RO:0002213Quorum-sensing autoinducers trigger sensor proteins that drive global virulence gene expression.
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DOI:10.3390/ijms25052655
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quorum sensing autoinducers
promotes
biofilm formation
RO:0002213Quorum sensing is crucial for biofilm formation and maintenance.
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DOI:10.1016/j.tcsw.2024.100133
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biofilm formation
enables
persistent infection
RO:0002327Biofilm communities enable chronic/persistent infection of the host.
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DOI:10.1016/j.tcsw.2024.100133
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biofilm extracellular matrix
enables
antibiotic tolerance
RO:0002327The biofilm EPS matrix limits antimicrobial penetration and protects deeper-layer cells, increasing tolerance.
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DOI:10.3390/bacteria3030008
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biofilm formation
enables
host immune evasion
RO:0002327Biofilms help bacteria evade the host immune response, supporting chronic infection.
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DOI:10.3390/antibiotics13070619
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polysaccharide capsule
enables
host immune evasion
RO:0002327An antiphagocytic polysaccharide capsule resists phagocytosis, aiding immune evasion.
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DOI:10.58532/nbennurmmch1
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host immune evasion
enables
host colonization
RO:0002327Evasion of host immune defenses permits sustained microbial growth within host tissues.
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DOI:10.58532/nbennurmmch1
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horizontal gene transfer
contributes to
virulence factors
RO:0002326Horizontal gene transfer, recombination, and gene gain/loss drive acquisition of virulence-associated host-adaptation traits.
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DOI:10.1093/femsre/fuae019
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1146/annurev.micro.62.081307.162938
Parent traits (1)
Children (4)
Synonyms (2)
- General.keywords
- Safety information.risk assessment
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1004000[-1.432, -2.796, -2.792, +0.353, …]
Nearest neighbors in embedding space
- ecology opportunistic pathogen 1.000
- environment mercury tolerant 0.845
- environment desiccation tolerant 0.845
- physiology dormancy 0.845
- physiology chemotaxis 0.845
- physiology catalase activity 0.845
- physiology bioluminescence 0.845
- physiology antibiotic resistance 0.845
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed causal graph linking virulence factors, secretion systems, host colonization, and host damage to the pathogenic-to-host trait.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×2).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 8 evidence-backed generic edges (9 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 8 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×5, RO:0002213×2, RO:0002326×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0009292×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0042710×1).