pathogenic to host

METPO:1004000 · CLASS · REVIEWED

A phenotype where a microbe is a pathogen of some host organism.

Pathogenic-to-host virulence-factor program

DOI-backed graph linking encoded virulence factors, secretion-based effector delivery, host colonization, and host damage to the pathogenic-to-host phenotype.

Pathogenic-to-host virulence-factor program Interactive directed graph showing evidence-backed causal relationships for pathogenic to host.

Edge evidence

  • virulence factors enables host colonization RO:0002327

    Virulence factors enable adhesion, immune evasion, and tissue invasion required for host colonization.

    • DOI:10.1146/annurev.micro.62.081307.162938 virulence factors Supports virulence factors as enablers of host colonization.
  • protein secretion systems delivers virulence factors

    Bacterial protein secretion systems deliver effector virulence factors into host environments or host cells.

    • DOI:10.1038/nrmicro1592 secretion systems Supports secretion systems as delivery machinery for effectors.
  • host colonization enables host damage RO:0002327

    Established host colonization enables sustained damage to host tissues.

    • DOI:10.1146/annurev.micro.62.081307.162938 virulence factors Supports the colonization-to-damage progression characteristic of pathogens.
  • host damage manifests as pathogenic to host METPO:2007400

    Host damage manifests the pathogenic-to-host trait.

    • DOI:10.1146/annurev.micro.62.081307.162938 virulence factors Supports the trait endpoint.
  • quorum sensing autoinducers activates virulence gene expression RO:0002213

    Quorum-sensing autoinducers trigger sensor proteins that drive global virulence gene expression.

    • DOI:10.3390/ijms25052655 Autoinducers are hormone-like molecules triggering sensor proteins to mediate changes in global gene expression; QS controls virulence factor production.
  • quorum sensing autoinducers promotes biofilm formation RO:0002213

    Quorum sensing is crucial for biofilm formation and maintenance.

    • DOI:10.1016/j.tcsw.2024.100133 QS is crucial for biofilm formation and maintenance.
  • biofilm formation enables persistent infection RO:0002327

    Biofilm communities enable chronic/persistent infection of the host.

    • DOI:10.1016/j.tcsw.2024.100133 QS-driven biofilm formation and maintenance underlies persistent infection.
  • biofilm extracellular matrix enables antibiotic tolerance RO:0002327

    The biofilm EPS matrix limits antimicrobial penetration and protects deeper-layer cells, increasing tolerance.

    • DOI:10.3390/bacteria3030008 EPS matrix protects deeper-layer cells from antimicrobials; biofilm bacteria increase resistance about 1000 fold (DOI:10.3390/ijms25052655).
  • biofilm formation enables host immune evasion RO:0002327

    Biofilms help bacteria evade the host immune response, supporting chronic infection.

    • DOI:10.3390/antibiotics13070619 Biofilms help bacteria evade the immune response.
  • polysaccharide capsule enables host immune evasion RO:0002327

    An antiphagocytic polysaccharide capsule resists phagocytosis, aiding immune evasion.

    • DOI:10.58532/nbennurmmch1 An antiphagocytic capsule aids immune evasion; polysaccharide capsule resists phagocytosis to increase virulence.
  • host immune evasion enables host colonization RO:0002327

    Evasion of host immune defenses permits sustained microbial growth within host tissues.

    • DOI:10.58532/nbennurmmch1 Immune evasion via antiphagocytic capsule supports establishment within the host.
  • horizontal gene transfer contributes to virulence factors RO:0002326

    Horizontal gene transfer, recombination, and gene gain/loss drive acquisition of virulence-associated host-adaptation traits.

    • DOI:10.1093/femsre/fuae019 Horizontal gene transfer, gene acquisition and deletion, and genome rearrangements are major drivers of host adaptation.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev.micro.62.081307.162938

Parent traits (1)

Synonyms (2)

  • General.keywords RELATED_SYNONYM · metpo.owl
  • Safety information.risk assessment RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1004000 [-1.432, -2.796, -2.792, +0.353, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking virulence factors, secretion systems, host colonization, and host damage to the pathogenic-to-host trait.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×2).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  5. · ENRICH_CAUSAL_GRAPH · claude

    Added 8 evidence-backed generic edges (9 new nodes) from the deep-research report.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 8 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×5, RO:0002213×2, RO:0002326×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0009292×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0042710×1).