bioluminescence
traitmech:000085 · CLASS · REVIEWED
A physiological capability to emit visible light through a luciferase-catalyzed reaction, frequently regulated by quorum sensing in marine bacteria such as Aliivibrio and Photobacterium.
Luciferase-catalyzed light emission
Edge evidence
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luciferase
enables
bioluminescence
RO:0002327Luciferase carries out the light-emitting reaction.
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DOI:10.1016/j.csbj.2018.11.003
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bioluminescence
consumes
molecular oxygen
biolink:consumesLight emission consumes molecular oxygen.
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DOI:10.1016/j.csbj.2018.11.003
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bioluminescence
enables
bioluminescence
RO:0002327The luciferase reaction realizes the bioluminescence trait.
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DOI:10.1146/annurev.cellbio.21.012704.131001
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luciferase
catalyzes
long-chain aldehyde
biolink:catalyzesLuciferase catalyzes the monooxygenation of long-chain aliphatic aldehydes.
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DOI:10.1016/j.csbj.2018.11.003
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reduced flavin mononucleotide (FMNH2)
is substrate for
bioluminescence
FMNH2 is a required substrate consumed in the light-emitting luciferase reaction.
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DOI:10.1016/j.csbj.2018.11.003
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long-chain aldehyde
is substrate for
bioluminescence
Long-chain aldehyde is a required substrate of the light-emitting reaction.
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DOI:10.1016/j.csbj.2018.11.003
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LuxG flavin reductase
converts
flavin mononucleotide (FMN)
LuxG flavin reductase reduces free FMN to FMNH2 supplying the luciferase reaction.
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DOI:10.1016/j.csbj.2018.11.003
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LuxG flavin reductase
produces
reduced flavin mononucleotide (FMNH2)
METPO:2000202LuxG generates the reduced flavin substrate FMNH2.
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DOI:10.1016/j.csbj.2018.11.003
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LuxCDE fatty acid reductase complex
supplies
long-chain aldehyde
The LuxCDE fatty acid reductase complex supplies the long-chain aldehyde substrate.
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DOI:10.1016/j.csbj.2018.11.003
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LuxI autoinducer synthase
synthesizes
3-oxo-C6-HSL autoinducer
LuxI autoinducer synthase produces the 3-oxo-C6-HSL signal.
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DOI:10.1128/jb.00035-24
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3-oxo-C6-HSL autoinducer
binds
LuxR transcription factor
The 3-oxo-C6-HSL autoinducer binds the LuxR transcription factor.
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DOI:10.1128/jb.00035-24
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LuxR transcription factor
activates expression of
lux locus expression
Autoinducer-bound LuxR activates expression of the lux locus.
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DOI:10.1128/jb.00035-24
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lux locus expression
produces
luciferase
METPO:2000202Expression of the lux locus produces the luciferase light-production machinery.
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DOI:10.1128/jb.00035-24
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1016/j.csbj.2018.11.003
Parent traits (1)
Synonyms (1)
- luminescent
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000059[-2.682, -2.070, -3.656, -0.652, …]
Nearest neighbors in embedding space
- environment cadmium tolerant 1.000
- morphology sulfur globule 1.000
- environment cobalt tolerant 1.000
- environment copper tolerant 1.000
- environment desiccation tolerant 1.000
- environment piezotolerant 1.000
- environment obligately piezophilic 1.000
- morphology gas vesicle 1.000
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate PHYSIOLOGY trait (bioluminescence) from literature research.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (luciferase light emission) with GO/CHEBI node groundings and RO/biolink predicate groundings; promoted PROPOSED to REVIEWED.
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A010SSZ8×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 10 evidence-backed generic edges (9 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×2, biolink:catalyzes×1).