plant pathogen
METPO:1004003 · CLASS · REVIEWED
A pathogen that infects organisms in the kingdom Viridiplantae.
Plant-pathogen T3SS-effector and wall-degradation program
Edge evidence
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plant-cell-wall-degrading enzymes
enables
plant tissue colonization
RO:0002327Plant-cell-wall-degrading enzymes enable bacterial spread within plant tissues.
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DOI:10.1146/annurev.micro.55.1.535cell-wall-degrading enzymes
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type III secretion system
delivers
T3SS effector proteins
The T3SS translocates effector proteins from the bacterium into plant cells.
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DOI:10.1146/annurev.phyto.43.040204.135923type III secretion system
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T3SS effector proteins
suppresses
plant immune suppression
RO:0002212Translocated T3SS effectors suppress plant innate immunity.
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DOI:10.1146/annurev.phyto.43.040204.135923effector proteins
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plant immune suppression
enables
plant tissue colonization
RO:0002327Immune suppression supports sustained colonization of plant tissues.
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DOI:10.1146/annurev.phyto.43.040204.135923plant pathogen
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plant tissue colonization
causes
plant disease
biolink:causesEstablished colonization of plant tissues causes plant disease.
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DOI:10.1146/annurev.micro.55.1.535cell-wall-degrading enzymes
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plant disease
manifests as
plant pathogen
METPO:2007400Plant disease manifests the plant-pathogen trait.
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DOI:10.1146/annurev.phyto.43.040204.135923type III secretion
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quorum sensing
positively regulates
biofilm formation
Quorum sensing is required for cooperative biofilm formation in plant-pathogenic bacteria.
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DOI:10.3390/plants12112207
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quorum sensing
positively regulates
exopolysaccharide production
Quorum sensing and c-di-GMP signaling positively regulate exopolysaccharide biosynthesis.
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DOI:10.3390/plants12112207
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exopolysaccharide production
enables
biofilm formation
RO:0002327Exopolysaccharide production builds the biofilm matrix enabling biofilm formation.
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DOI:10.3390/plants12112207
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plant-cell-wall-degrading enzymes
degrades
plant cell wall
METPO:2000007Secreted cell-wall-degrading enzymes degrade the plant cell wall.
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DOI:10.21608/mb.2024.307263.1134
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ER-Golgi apoplastic effector secretion
delivers
apoplastic effectors
The conventional ER-Golgi secretory pathway delivers apoplastic effectors.
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DOI:10.1094/MPMI-12-23-0212-CR
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apoplastic effectors
suppresses
plant immune suppression
RO:0002212Secreted apoplastic effectors contribute to suppression of plant immunity during infection.
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DOI:10.1094/MPMI-12-23-0212-CR
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1146/annurev.phyto.43.040204.135923
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1004003[+6.432, -2.221, -31.218, +2.228, …]
Nearest neighbors in embedding space
- ecology pathogenic to host 0.440
- ecology opportunistic pathogen 0.440
- morphology prosthecate 0.270
- environment cobalt tolerant 0.270
- environment copper tolerant 0.270
- morphology sulfur globule 0.270
- environment desiccation tolerant 0.270
- morphology S-layer 0.270
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed causal graph linking plant-cell-wall-degrading enzymes, T3SS effector delivery, immune suppression, plant tissue colonization, and disease to the plant-pathogen trait.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).
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RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: supports → enables ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×1).
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REMOVE_REDUNDANT_SYNONYM · claude
Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).
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ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, RO:0002212×1).
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GROUND_CAUSAL_NODES · claude
Grounded 4 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0140649×1, GO:0009372×1, GO:0042710×1, GO:0009505×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000007×1).