facultative psychrophilic

METPO:1000720 · CLASS · REVIEWED

A temperature preference characterized by the ability to grow at low temperatures (typically below 20 degrees C) while maintaining optimal growth at moderate temperatures.

Facultative psychrophily cold-tolerance mechanism

Evidence-backed causal sketch linking facultative psychrophily to low-temperature growth, moderate-temperature optima, membrane remodeling, and cold acclimation proteins.

Facultative psychrophily cold-tolerance mechanism Interactive directed graph showing evidence-backed causal relationships for facultative psychrophilic.

Edge evidence

  • low temperature is tolerated by facultative psychrophilic

    Facultative psychrophiles can grow at low temperature.

    • DOI:10.1111/j.1574-6941.2009.00727.x capable of growth around 0 °C Review introduction supports low-temperature growth capacity.
  • moderate temperature supports optimum of facultative psychrophilic

    Facultative psychrophiles retain optimal growth at moderate temperatures.

    • DOI:10.1111/j.1574-6941.2009.00727.x optimum temperatures >20 °C Supports distinction from obligate psychrophiles.
  • low temperature decreases membrane fluidity RO:0002212

    Cold temperature decreases membrane fluidity.

    • DOI:10.1038/sj.embor.7400662 decreased membrane fluidity Supports membrane rigidification as a cold challenge.
  • unsaturated and branched-chain fatty acids regulates membrane fluidity RO:0002211

    Lipid remodeling maintains membrane function during cold growth.

    • DOI:10.1146/annurev-micro-091313-103612 incorporation of proportionally more unsaturated fatty acids Supports homoviscous adaptation during lower-temperature growth.
  • cold-shock proteins contributes to facultative psychrophilic RO:0002326

    Cold-shock proteins contribute to growth after temperature downshift.

    • DOI:10.1038/sj.embor.7400662 Cold-shock proteins have also been described Supports cold-shock proteins as cold-acclimation components.
  • low temperature induces two-component signaling system

    Cold sensing via membrane physical-state change activates a two-component system.

    • DOI:10.1007/s42770-023-01057-4 sensing the cold... leading to the activation of a two-component system that transduce the signal
  • fatty acid desaturase increases unsaturated and branched-chain fatty acids RO:0002213

    Desaturase acting on membrane acyl chains rapidly increases unsaturated lipids (homeoviscous response).

    • DOI:10.1016/B978-0-12-809633-8.02282-2 the desaturase acting on the acyl chains of the membrane lipids comes into play, thereby increasing the amount of unsaturated lipid
  • extracellular polymeric substances (EPS) protects against freeze-thaw cycles

    EPS surrounding cells acts as cryoprotectant against freeze-thaw damage.

    • DOI:10.37256/amtt.5220244537 exopolysaccharides (EPS) surrounding bacterial cells... providing protection against freeze-thaw cycles and acting as cryoprotectants
  • trehalose contributes to facultative psychrophilic RO:0002326

    Trehalose protects bacteria against abiotic stress including low temperature.

    • DOI:10.1038/s41598-023-41323-x Trehalose... plays an important role in protecting bacteria against a range of stresses
  • cold-shock proteins destabilizes RNA secondary structure

    CSPs act as chaperones destabilizing RNA secondary structures to maintain transcription/translation in cold.

    • DOI:10.1007/s42770-023-01057-4 CSPs function as chaperones that destabilize those secondary structures and maintain a single-stranded molecule
  • compatible osmolytes contributes to facultative psychrophilic RO:0002326

    Accumulation of compatible osmolytes prevents cell shrinkage and water loss at sub-zero temperatures.

    • DOI:10.3389/fmicb.2023.1197797 Accumulation of compatible osmolytes (glycine betaine, trehalose, glycerol, sucrose, mannitol etc.)... to prevent cell shrinkage and water loss during sub-zero temperature

Provenance

Source
METPO (2025-11-25)
Author
Anthea Guo
Definition source
DOI:10.1111/j.1574-6941.2009.00727.x

Synonyms (1)

  • facultative psychrophile RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000720 [-2.148, -2.202, -4.718, +2.478, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Reviewed facultative psychrophilic trait, corrected temperature text encoding, and added DOI-backed causal graph for low-temperature growth with moderate-temperature optimum.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1).

  4. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0000383×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007505×1).

  8. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: membrane fluidity: BIOLOGICAL_PROCESS → QUALITY ×1.

  9. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×1).

  10. · FIX_NODE_GROUNDING_CURIE · claude

    Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).

  11. · REMOVE_REDUNDANT_SYNONYM · claude

    Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).

  12. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.

  13. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×2, RO:0002213×1).

  14. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:23366×1).

  15. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A031GJU0×1).