facultative psychrophilic
METPO:1000720 · CLASS · REVIEWED
A temperature preference characterized by the ability to grow at low temperatures (typically below 20 degrees C) while maintaining optimal growth at moderate temperatures.
Facultative psychrophily cold-tolerance mechanism
Edge evidence
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low temperature
is tolerated by
facultative psychrophilic
Facultative psychrophiles can grow at low temperature.
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DOI:10.1111/j.1574-6941.2009.00727.xcapable of growth around 0 °C
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moderate temperature
supports optimum of
facultative psychrophilic
Facultative psychrophiles retain optimal growth at moderate temperatures.
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DOI:10.1111/j.1574-6941.2009.00727.xoptimum temperatures >20 °C
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low temperature
decreases
membrane fluidity
RO:0002212Cold temperature decreases membrane fluidity.
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DOI:10.1038/sj.embor.7400662decreased membrane fluidity
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unsaturated and branched-chain fatty acids
regulates
membrane fluidity
RO:0002211Lipid remodeling maintains membrane function during cold growth.
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DOI:10.1146/annurev-micro-091313-103612incorporation of proportionally more unsaturated fatty acids
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cold-shock proteins
contributes to
facultative psychrophilic
RO:0002326Cold-shock proteins contribute to growth after temperature downshift.
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DOI:10.1038/sj.embor.7400662Cold-shock proteins have also been described
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low temperature
induces
two-component signaling system
Cold sensing via membrane physical-state change activates a two-component system.
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DOI:10.1007/s42770-023-01057-4
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fatty acid desaturase
increases
unsaturated and branched-chain fatty acids
RO:0002213Desaturase acting on membrane acyl chains rapidly increases unsaturated lipids (homeoviscous response).
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DOI:10.1016/B978-0-12-809633-8.02282-2
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extracellular polymeric substances (EPS)
protects against
freeze-thaw cycles
EPS surrounding cells acts as cryoprotectant against freeze-thaw damage.
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DOI:10.37256/amtt.5220244537
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trehalose
contributes to
facultative psychrophilic
RO:0002326Trehalose protects bacteria against abiotic stress including low temperature.
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DOI:10.1038/s41598-023-41323-x
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cold-shock proteins
destabilizes
RNA secondary structure
CSPs act as chaperones destabilizing RNA secondary structures to maintain transcription/translation in cold.
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DOI:10.1007/s42770-023-01057-4
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compatible osmolytes
contributes to
facultative psychrophilic
RO:0002326Accumulation of compatible osmolytes prevents cell shrinkage and water loss at sub-zero temperatures.
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DOI:10.3389/fmicb.2023.1197797
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Provenance
- Source
- METPO (2025-11-25)
- Author
- Anthea Guo
- Definition source
- DOI:10.1111/j.1574-6941.2009.00727.x
Parent traits (1)
Synonyms (1)
- facultative psychrophile
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000720[-2.148, -2.202, -4.718, +2.478, …]
Nearest neighbors in embedding space
- environment extreme hyperthermophilic 0.904
- environment temperature preference 0.900
- environment thermotolerant 0.768
- environment psychrotolerant 0.760
- environment facultatively alkaphilic 0.521
- environment neutrophilic 0.517
- environment obligately acidophilic 0.514
- environment alkaphilic 0.513
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_LITERATURE · codex
Reviewed facultative psychrophilic trait, corrected temperature text encoding, and added DOI-backed causal graph for low-temperature growth with moderate-temperature optimum.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1).
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·
RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0000383×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007505×1).
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·
RETYPE_CAUSAL_NODES · claude
Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: membrane fluidity: BIOLOGICAL_PROCESS → QUALITY ×1.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×1).
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FIX_NODE_GROUNDING_CURIE · claude
Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).
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REMOVE_REDUNDANT_SYNONYM · claude
Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).
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ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×2, RO:0002213×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:23366×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A031GJU0×1).