psychrotolerant

METPO:1000618 · CLASS · REVIEWED

A temperature preference in which growth can occur at low temperatures without an obligate low-temperature preference.

Psychrotolerant facultative cold-adaptation mechanism

DOI-backed graph linking psychrotolerance to low-temperature membrane and enzyme acclimation that does not preclude growth at moderate ambient temperatures.

Psychrotolerant facultative cold-adaptation mechanism Interactive directed graph showing evidence-backed causal relationships for psychrotolerant.

Edge evidence

  • low temperature decreases membrane fluidity RO:0002212

    Low temperature reduces membrane fluidity, requiring compensation.

    • DOI:10.1038/sj.embor.7400662 decreased membrane fluidity Supports cold-end membrane stress as the physical challenge for psychrotolerant growth.
  • facultative lipid remodeling regulates membrane fluidity RO:0002211

    Facultative lipid remodeling maintains workable membrane fluidity at low temperature.

    • DOI:10.1146/annurev-micro-091313-103612 more unsaturated fatty acids Supports homoviscous adaptation as the mechanism employed under cold exposure.
  • cold-shock response enables psychrotolerant RO:0002327

    The cold-shock response enables acclimation to low temperature without obligate cold dedication.

    • DOI:10.1038/sj.embor.7400662 Cold-shock proteins have also been described Supports cold-shock proteins as a hallmark facultative-cold adaptation.
  • facultative lipid remodeling manifests as psychrotolerant METPO:2007400

    Facultative lipid remodeling at low temperature manifests the psychrotolerant trait in representative organisms.

    • DOI:10.1099/ijs.0.65141-0 Pseudomonas guineae sp. nov., a novel psychrotolerant bacterium Supports the trait endpoint in a representative organism.
  • low temperature causes membrane rigidification and thickening biolink:causes

    A low-temperature shift causes membrane rigidification and thickening toward a gel-phase transition.

    • DOI:10.1128/spectrum.03925-23 Cold shock causes membrane rigidification and concomitant thickening, potentially culminating in a gel-phase transition.
  • low temperature increases unsaturated hopanoids RO:0002213

    Decreasing growth temperature increases the unsaturated hopanoid fraction as a compositional cold adaptation.

    • DOI:10.1007/s42770-023-01057-4 As the growth temperature decreased from 20 to 4 C, the total percent of unsaturated hopanoids increased from 27 to 49%.
  • compatible solute accumulation protects protein and membrane stability under cold stress

    Compatible solute accumulation stabilizes proteins and membranes during low-temperature stress.

    • DOI:10.37256/amtt.5220244537 Compatible solutes depress freezing point, stabilize proteins and membranes, scavenge radicals, and act as cryoprotectants.
  • extracellular polymeric substances (EPS) provides cryoprotection against freeze-thaw cycles

    EPS surrounding cells provide cryoprotection against freeze-thaw cycles.

    • DOI:10.37256/amtt.5220244537 EPS surrounding cells play a critical role in cold adaptation by providing protection against freeze-thaw cycles and acting as cryoprotectants.
  • psychrotolerant has capability growth at 4 degrees C

    The psychrotolerant trait entails the capacity to grow at low temperatures such as 4 C while retaining higher optimal temperatures.

    • DOI:10.1007/s42770-023-01057-4 Psychrotolerant/psychrotroph microbes can grow at 4 C and have optimal growth temperatures above 20 C.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1099/ijs.0.65141-0

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000618 [-0.575, -4.190, -4.805, +2.930, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_ORGANISM_EXAMPLE · codex

    Added Pseudomonas guineae organism example with PMID-backed evidence.

  3. · CURATED_CAUSAL_GRAPH · claude

    Added DOI-backed causal graph linking facultative cold adaptation (lipid remodeling and cold-shock response) to the psychrotolerant trait.

  4. · IMPROVED_CAUSAL_GRAPH_EVIDENCE · codex

    Replaced Pseudomonas guineae PMID fallback with the article DOI in definition, record evidence, and CausalEdge evidence.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  7. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.

  8. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  9. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0000383×1).

  10. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007505×1).

  11. · RETYPE_CAUSAL_NODES · claude

    Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: membrane fluidity: BIOLOGICAL_PROCESS → QUALITY ×1.

  12. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×1).

  13. · FIX_NODE_GROUNDING_CURIE · claude

    Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).

  14. · REMOVE_REDUNDANT_SYNONYM · claude

    Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).

  15. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (7 new nodes) from the deep-research report.

  16. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, RO:0002213×1).