psychrotolerant
METPO:1000618 · CLASS · REVIEWED
A temperature preference in which growth can occur at low temperatures without an obligate low-temperature preference.
Psychrotolerant facultative cold-adaptation mechanism
Edge evidence
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low temperature
decreases
membrane fluidity
RO:0002212Low temperature reduces membrane fluidity, requiring compensation.
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DOI:10.1038/sj.embor.7400662decreased membrane fluidity
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facultative lipid remodeling
regulates
membrane fluidity
RO:0002211Facultative lipid remodeling maintains workable membrane fluidity at low temperature.
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DOI:10.1146/annurev-micro-091313-103612more unsaturated fatty acids
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cold-shock response
enables
psychrotolerant
RO:0002327The cold-shock response enables acclimation to low temperature without obligate cold dedication.
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DOI:10.1038/sj.embor.7400662Cold-shock proteins have also been described
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facultative lipid remodeling
manifests as
psychrotolerant
METPO:2007400Facultative lipid remodeling at low temperature manifests the psychrotolerant trait in representative organisms.
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DOI:10.1099/ijs.0.65141-0Pseudomonas guineae sp. nov., a novel psychrotolerant bacterium
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low temperature
causes
membrane rigidification and thickening
biolink:causesA low-temperature shift causes membrane rigidification and thickening toward a gel-phase transition.
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DOI:10.1128/spectrum.03925-23
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low temperature
increases
unsaturated hopanoids
RO:0002213Decreasing growth temperature increases the unsaturated hopanoid fraction as a compositional cold adaptation.
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DOI:10.1007/s42770-023-01057-4
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compatible solute accumulation
protects
protein and membrane stability under cold stress
Compatible solute accumulation stabilizes proteins and membranes during low-temperature stress.
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DOI:10.37256/amtt.5220244537
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extracellular polymeric substances (EPS)
provides
cryoprotection against freeze-thaw cycles
EPS surrounding cells provide cryoprotection against freeze-thaw cycles.
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DOI:10.37256/amtt.5220244537
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psychrotolerant
has capability
growth at 4 degrees C
The psychrotolerant trait entails the capacity to grow at low temperatures such as 4 C while retaining higher optimal temperatures.
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DOI:10.1007/s42770-023-01057-4
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1099/ijs.0.65141-0
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000618[-0.575, -4.190, -4.805, +2.930, …]
Nearest neighbors in embedding space
- environment temperature preference 0.833
- environment extreme hyperthermophilic 0.821
- environment facultative psychrophilic 0.760
- environment thermotolerant 0.684
- environment NaCl range 0.474
- physiology antibiotic resistance 0.465
- physiology persister cell formation 0.465
- upper phenotype 0.465
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_ORGANISM_EXAMPLE · codex
Added Pseudomonas guineae organism example with PMID-backed evidence.
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CURATED_CAUSAL_GRAPH · claude
Added DOI-backed causal graph linking facultative cold adaptation (lipid remodeling and cold-shock response) to the psychrotolerant trait.
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IMPROVED_CAUSAL_GRAPH_EVIDENCE · codex
Replaced Pseudomonas guineae PMID fallback with the article DOI in definition, record evidence, and CausalEdge evidence.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).
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RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0000383×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007505×1).
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RETYPE_CAUSAL_NODES · claude
Re-typed 1 causal-node node_type field(s) to align with CausalNodeTypeEnum semantics: membrane fluidity: BIOLOGICAL_PROCESS → QUALITY ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×1).
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FIX_NODE_GROUNDING_CURIE · claude
Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).
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REMOVE_REDUNDANT_SYNONYM · claude
Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).
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ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (7 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, RO:0002213×1).