persister cell formation

traitmech:000082 · CLASS · REVIEWED

Formation of dormant phenotypic variants (persister cells) that are transiently tolerant to antibiotics and other lethal stresses without carrying genetic resistance, arising stochastically in a population.

Persister dormancy and antibiotic tolerance

Evidence-backed causal sketch linking dormancy to stochastic persister formation and transient antibiotic tolerance.

Persister dormancy and antibiotic tolerance Interactive directed graph showing evidence-backed causal relationships for persister cell formation.

Edge evidence

  • dormancy process enables persister cell formation RO:0002327

    Dormancy underlies stochastic persister formation.

    • DOI:10.1146/annurev.micro.112408.134306 Lewis reviews persisters as dormant tolerant variants.
  • persister cell formation enables antibiotic tolerance RO:0002327

    Persister cells transiently tolerate antibiotics.

    • DOI:10.1038/nrmicro1557 Lewis links persisters to recalcitrant infection.
  • persister cell formation characterized by biphasic killing curve

    Persistence produces a biphasic time-kill curve diagnostic of a tolerant subpopulation.

    • DOI:10.1128/ecosalplus.esp-0025-2022 A hallmark of persistence is the biphasic killing curve.
  • persister cell formation has characteristic minimum inhibitory concentration of susceptible cells

    Persisters retain the same MIC as susceptible cells, distinguishing persistence from resistance.

    • DOI:10.1186/s12866-024-03628-3 Persisters had the same minimum inhibitory concentration (MIC) as the susceptible cells.
  • antibiotic resistance has characteristic elevated minimum inhibitory concentration

    Resistant bacteria have a significantly higher MIC, contrasting with the unchanged MIC of persisters.

    • DOI:10.1186/s12866-024-03628-3 The MIC of resistant bacteria was significantly higher; scope edge excluding resistance from persistence.
  • antibiotic tolerance has characteristic whole-population phenotype

    Tolerance applies to the whole population, whereas persisters are a small subpopulation.

    • DOI:10.1186/s12866-024-03628-3 Persisters are a smaller subpopulation, whereas tolerance is for the microbiota as a whole.
  • persister cell formation enables oxidative phosphorylation RO:0002327

    Persisters actively undergo a residual level of oxidative phosphorylation even during nutrient starvation.

    • DOI:10.1111/1751-7915.70042 Persisters still actively generated PMF by undergoing a certain level of oxidative phosphorylation, even after complete nutrient starvation for 24 h.
  • oxidative phosphorylation results in proton motive force

    Residual oxidative phosphorylation generates proton motive force that sustains persister survival.

    • DOI:10.1111/1751-7915.70042 Persisters generated PMF via oxidative phosphorylation; ETC components maintain PMF underlying tolerance.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1146/annurev.micro.112408.134306

Parent traits (1)

Synonyms (1)

  • persistence RELATED_SYNONYM · DOI:10.1146/annurev.micro.112408.134306

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000059 [-2.682, -2.070, -3.656, -0.652, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate PHYSIOLOGY trait (persister cell formation); sub-variant of dormancy. Distinct from genetic antibiotic resistance.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (persister dormancy/tolerance) with GO node grounding and RO predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006119×1).