microaerotolerant

METPO:1000610 · CLASS · REVIEWED

An oxygen preference that tolerates low levels of molecular oxygen (O₂) without requiring it.

Microaerotolerant low-oxygen survival mechanism

Evidence-backed causal sketch linking microaerotolerance to limited oxygen exposure and oxidative stress defenses.

Microaerotolerant low-oxygen survival mechanism Interactive directed graph showing evidence-backed causal relationships for microaerotolerant.

Edge evidence

  • limited oxygen exposure tolerated by microaerotolerant

    Microaerotolerant organisms survive limited oxygen exposure.

    • DOI:10.1016/j.biortech.2011.02.011 microaerotolerant or aerotolerant anaerobes can survive Supports low-oxygen survival as the defining trait context.
  • microaerotolerant does not require limited oxygen exposure

    Microaerotolerance differs from microaerophily because oxygen is tolerated rather than required.

    • DOI:10.1038/nrmicro2970 Many obligate anaerobes tolerate transient or low levels of O2 Supports low oxygen tolerance without implying oxygen requirement.
  • limited oxygen exposure can generate reactive oxygen species

    Oxygen exposure can create ROS stress that tolerant organisms must manage.

    • DOI:10.1038/s41579-021-00583-y molecular oxygen and ROS Review links oxygen exposure with ROS stress.
  • oxidative stress defense enzymes mitigates reactive oxygen species METPO:2007407

    ROS detoxification enzymes contribute to oxygen tolerance.

    • DOI:10.1128/iai.16.1.20-25.1977 oxygen tolerance of anaerobes is usually related to their level of SOD Supports antioxidant defense as a mechanism for oxygen tolerance.
  • microaerotolerant compatible with anaerobic growth

    Microaerotolerant organisms can remain anaerobic while surviving limited oxygen exposure.

    • DOI:10.1016/j.biortech.2011.02.011 microaerotolerant or aerotolerant anaerobes Supports microaerotolerance as an anaerobe oxygen-tolerance subtype.
  • intermediate oxygen level maximizes growth of microaerotolerant

    Maximal growth of microaerotolerant cells often occurs at intermediate oxygen levels.

    • DOI:10.1128/CMR.00110-14 Growth occurs in the presence or absence of oxygen; however, maximal growth occurs at intermediate oxygen levels.
  • superoxide reductase reduces superoxide METPO:2000017

    Superoxide reductase reduces superoxide (to hydrogen peroxide) using reduced electron donors.

    • DOI:10.1128/IAI.00502-24 Review notes SOR reduces superoxide using electrons from donors like NADH.
  • superoxide reductase produces hydrogen peroxide METPO:2000202

    Reduction of superoxide by SOR yields hydrogen peroxide.

    • DOI:10.1128/IAI.00502-24 SOR reduces superoxide to H2O2 as part of the anaerobe oxygen-defense backbone.
  • rubrerythrin/peroxidase reduces hydrogen peroxide METPO:2000017

    Rubrerythrin/peroxidases reduce hydrogen peroxide to water.

    • DOI:10.1128/IAI.00502-24 Review states Rbr/peroxidases reduce H2O2 to water.
  • reduced electron donors (NADH) enables function of oxidative stress defense enzymes

    Protection by SOR/Rbr defenses depends on available reduced electron donors.

    • DOI:10.1128/IAI.00502-24 The protection conferred by SOR/Rbr depends on available reduced electron donors.
  • gut lumen oxygen gradient creates selection for low-oxygen defense systems

    Host gut oxygen gradients expose anaerobes to low O2, selecting for low-O2 defense systems.

    • DOI:10.1128/IAI.00502-24 Gut O2 gradients (colon lumen 0.1-0.4% to ~5% in tissues) expose anaerobes to low O2 during colonization/inflammation.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1016/j.biortech.2011.02.011

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000610 [-1.136, -2.135, -2.147, +0.656, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Added source-backed evidence for microaerotolerant oxygen exposure survival.

  3. · ADDED_ORGANISM_EXAMPLE · codex

    Added Simulacricoccus ruber organism example with PMID-backed evidence.

  4. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for low-oxygen survival and oxidative stress defense in microaerotolerant organisms.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×1).

  6. · REMOVE_REDUNDANT_SYNONYM · claude

    Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).

  7. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (8 new nodes) from the deep-research report.

  8. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000017×2, METPO:2000202×1).

  9. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:18421×1, CHEBI:16240×1).

  10. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A090JWT2×1).