moderately halophilic

METPO:1000623 · CLASS · REVIEWED

A halophily preference where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M.

Moderate halophile compatible-solute mechanism

Evidence-backed causal sketch linking moderate halophily to NaCl stress and compatible-solute osmoadaptation.

Moderate halophile compatible-solute mechanism Interactive directed graph showing evidence-backed causal relationships for moderately halophilic.

Edge evidence

  • elevated NaCl causes osmotic stress biolink:causes

    Moderate NaCl elevation imposes osmotic stress that must be balanced for growth.

    • DOI:10.1371/journal.pone.0168818 cope with high salinities Halomonas elongata osmoregulation study supports high salinity as the stressor.
  • ectoine mitigates osmotic stress METPO:2007407

    Ectoine accumulation helps cells maintain osmotic balance at moderate salinity.

    • DOI:10.1371/journal.pone.0168818 synthesizes ectoine as its major compatible solute Supports ectoine as a compatible-solute mechanism in halophilic bacteria.
  • glycine betaine mitigates osmotic stress METPO:2007407

    Glycine betaine uptake can contribute to bacterial osmoprotection.

    • DOI:10.1093/femsre/fuy009 glycine betaine uptake Review supports glycine betaine transport as an osmoadaptation route.
  • ectoine enables moderately halophilic RO:0002327

    Compatible-solute accumulation supports growth at elevated NaCl.

    • DOI:10.1371/journal.pone.0168818 allows microorganisms to cope with high salinities Supports compatible solutes as contributors to moderate halophily.
  • elevated NaCl selects for moderately halophilic METPO:2007401

    Moderate halophiles grow best under elevated salinity.

    • DOI:10.1093/femsre/fuy009 Moderately halophilic bacteria Review identifies moderate halophiles as models for bacterial osmotic adaptation.
  • osmotic stress induces compatible solute accumulation

    Osmotic stress under elevated NaCl induces accumulation of organic compatible solutes.

    • DOI:10.1128/mmbr.62.2.504-544.1998 Ventosa et al. 1998: organic compatible solutes (glycine betaine, ectoine, hydroxyectoine, amino acids) predominate in moderate halophiles.
  • EctD (ectoine hydroxylase) converts hydroxyectoine

    Ectoine hydroxylase EctD converts ectoine to hydroxyectoine, a generic ectoine-pathway step across halophiles.

    • DOI:10.1186/s12934-021-01567-6 Liu et al. 2021: EctD is the ectoine hydroxylase converting ectoine to hydroxyectoine.
  • BCCT transporters imports glycine betaine METPO:2000208

    BCCT-family carriers (BetT, BetP, OpuD) import compatible solutes such as glycine betaine.

    • DOI:10.58088/07hg-r941 Lichty 2024: BCCT carriers (e.g., BetT, BetP, OpuD) import osmoprotectants.
  • TeaABC TRAP transporter imports hydroxyectoine METPO:2000208

    TeaABC TRAP transporter imports ectoine and hydroxyectoine for osmoadaptation.

    • DOI:10.58088/07hg-r941 Lichty 2024: TRAP systems (e.g., TeaABC) import ectoine and 5-hydroxyectoine.
  • TeaABC TRAP transporter imports ectoine METPO:2000208

    TeaABC TRAP transporter imports ectoine for osmoadaptation.

    • DOI:10.58088/07hg-r941 Lichty 2024: TRAP systems (e.g., TeaABC) import ectoine and 5-hydroxyectoine.
  • salt-out (compatible-solute) strategy predominates in moderately halophilic

    The salt-out / compatible-solute strategy predominates among moderate halophiles.

    • DOI:10.3389/frmbi.2023.1329925 Ionescu et al. 2024: 'salt-out' is more common among moderate halophiles and relies on accumulation of small organic compounds.

Provenance

Source
METPO (2025-11-25)
Author
Anthea Guo
Definition source
PMID:9758852

Synonyms (1)

  • moderate-halophilic RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000623 [-94.883, -13.167, +11.221, +70.341, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_ORGANISM_EXAMPLE · codex

    Added Halomonas elongata organism example with PMID-backed evidence.

  3. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for moderate halophile compatible-solute osmoadaptation.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×2, METPO:2007401×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006970×1).

  8. · REMOVE_REDUNDANT_SYNONYM · claude

    Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).

  9. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000208×3).

  11. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:49432×1).