vibrio shaped
METPO:1000686 · CLASS · REVIEWED
A cell shape in which an organism has a curved rod or comma morphology, characterized by a short curved cylindrical form with a single arc.
Vibrio-shape CrvA curvature mechanism
Edge evidence
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CrvA
self-assembles into
periplasmic filament
CrvA forms periplasmic filaments at the inner face of cell curvature.
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DOI:10.1016/j.cell.2016.12.019CrvA self-assembles into filaments at the inner face
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periplasmic filament
patterns
asymmetric peptidoglycan insertion
CrvA filaments pattern differential peptidoglycan insertion.
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DOI:10.1016/j.cell.2016.12.019asymmetrically patterns peptidoglycan insertion
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asymmetric peptidoglycan insertion
causes
cell-body curvature
biolink:causesUnequal peptidoglycan insertion creates more material on the outer face than the inner face, curving the cell.
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DOI:10.1016/j.cell.2016.12.019causing more material insertions into the outer face
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cell-body curvature
produces
vibrio shaped
METPO:2000202Curved rod morphology produces the vibrioid/comma-shaped trait.
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DOI:10.1016/j.cell.2016.12.019characteristic curved rod morphology
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CrvB
increases
cell-body curvature
RO:0002213CrvB expression increases CrvA assembly and cell curvature in a dose-dependent manner.
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DOI:10.1101/2020.02.20.954503
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CrvB
colocalizes with
periplasmic filament
CrvB colocalizes with CrvA in the same periplasmic inner-curve filament structure.
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DOI:10.1101/2020.02.20.954503
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VadR sRNA
represses
crvA mRNA
VadR sRNA is a post-transcriptional inhibitor of crvA mRNA.
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DOI:10.1038/s41467-020-19890-8
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crvA mRNA
translated into
CrvA
crvA mRNA is translated into the CrvA curvature determinant protein.
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DOI:10.1038/s41467-020-19890-8
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VadR sRNA
decreases
cell-body curvature
RO:0002212Mutation of vadR increases cell curvature whereas overexpression has the inverse effect, indicating VadR limits curvature.
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DOI:10.1038/s41467-020-19890-8
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VxrAB two-component system
activates transcription of
VadR sRNA
The VxrAB two-component system activates vadR transcription.
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DOI:10.1038/s41467-020-19890-8
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cyclic di-GMP
decreases
cell-body curvature
RO:0002212High c-di-GMP concentrations decrease cell curvature to generate straight rods.
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DOI:10.1073/pnas.2010199117
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Provenance
- Source
- METPO (2025-11-25)
- Author
- Jed Dongjin Kim-Ozaeta
- Definition source
- DOI:10.1016/j.cell.2016.12.019
Parent traits (1)
Synonyms (2)
- vibrio
- vibrio-shaped
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000686[-5.914, -107.472, -126.065, -23.277, …]
Nearest neighbors in embedding space
- morphology swarming motility 0.342
- morphology twitching motility 0.342
- morphology motile 0.342
- morphology spiral shaped 0.314
- physiology chemoautotrophic 0.314
- morphology non-spore forming 0.292
- physiology lithoheterotrophic 0.290
- environment non halophilic 0.284
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_LITERATURE · codex
Reviewed vibrio shape and added DOI-backed causal graph for CrvA periplasmic filaments, asymmetric peptidoglycan insertion, and curved-rod morphology.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1).
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (5 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×2, RO:0002213×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:49537×1).