vibrio shaped

METPO:1000686 · CLASS · REVIEWED

A cell shape in which an organism has a curved rod or comma morphology, characterized by a short curved cylindrical form with a single arc.

Vibrio-shape CrvA curvature mechanism

Evidence-backed causal sketch linking vibrioid curved-rod morphology to periplasmic CrvA polymers and asymmetric peptidoglycan insertion.

Vibrio-shape CrvA curvature mechanism Interactive directed graph showing evidence-backed causal relationships for vibrio shaped.

Edge evidence

  • CrvA self-assembles into periplasmic filament

    CrvA forms periplasmic filaments at the inner face of cell curvature.

    • DOI:10.1016/j.cell.2016.12.019 CrvA self-assembles into filaments at the inner face Supports CrvA as a periplasmic polymer at the inner curvature.
  • periplasmic filament patterns asymmetric peptidoglycan insertion

    CrvA filaments pattern differential peptidoglycan insertion.

    • DOI:10.1016/j.cell.2016.12.019 asymmetrically patterns peptidoglycan insertion Supports CrvA-dependent spatial patterning of wall insertion.
  • asymmetric peptidoglycan insertion causes cell-body curvature biolink:causes

    Unequal peptidoglycan insertion creates more material on the outer face than the inner face, curving the cell.

    • DOI:10.1016/j.cell.2016.12.019 causing more material insertions into the outer face Supports asymmetric wall insertion as the proximal cause of curvature.
  • cell-body curvature produces vibrio shaped METPO:2000202

    Curved rod morphology produces the vibrioid/comma-shaped trait.

    • DOI:10.1016/j.cell.2016.12.019 characteristic curved rod morphology Supports the observed Vibrio morphology as a curved-rod shape.
  • CrvB increases cell-body curvature RO:0002213

    CrvB expression increases CrvA assembly and cell curvature in a dose-dependent manner.

    • DOI:10.1101/2020.02.20.954503 crvB expression increased CrvA-GFP assembly as well as cell curvature in a dose-dependent manner.
  • CrvB colocalizes with periplasmic filament

    CrvB colocalizes with CrvA in the same periplasmic inner-curve filament structure.

    • DOI:10.1101/2020.02.20.954503 Both proteins localized to the same structure; CrvB-GFP filaments colocalized with periplasmic DsbA-mCherry.
  • VadR sRNA represses crvA mRNA

    VadR sRNA is a post-transcriptional inhibitor of crvA mRNA.

    • DOI:10.1038/s41467-020-19890-8 The VadR small RNA acts as a post-transcriptional inhibitor of the crvA mRNA.
  • crvA mRNA translated into CrvA

    crvA mRNA is translated into the CrvA curvature determinant protein.

    • DOI:10.1038/s41467-020-19890-8 crvA mRNA encodes the periplasmic CrvA protein that determines cell curvature.
  • VadR sRNA decreases cell-body curvature RO:0002212

    Mutation of vadR increases cell curvature whereas overexpression has the inverse effect, indicating VadR limits curvature.

    • DOI:10.1038/s41467-020-19890-8 Mutation of vadR increases cell curvature, whereas overexpression has the inverse effect.
  • VxrAB two-component system activates transcription of VadR sRNA

    The VxrAB two-component system activates vadR transcription.

    • DOI:10.1038/s41467-020-19890-8 vadR transcription is activated by the VxrAB two-component system.
  • cyclic di-GMP decreases cell-body curvature RO:0002212

    High c-di-GMP concentrations decrease cell curvature to generate straight rods.

    • DOI:10.1073/pnas.2010199117 High c-di-GMP concentrations decrease cell curvature to generate straight rods.

Provenance

Source
METPO (2025-11-25)
Author
Jed Dongjin Kim-Ozaeta
Definition source
DOI:10.1016/j.cell.2016.12.019

Parent traits (1)

Synonyms (2)

  • vibrio RELATED_SYNONYM · metpo.owl
  • vibrio-shaped RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000686 [-5.914, -107.472, -126.065, -23.277, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Reviewed vibrio shape and added DOI-backed causal graph for CrvA periplasmic filaments, asymmetric peptidoglycan insertion, and curved-rod morphology.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000202×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  5. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (5 new nodes) from the deep-research report.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002212×2, RO:0002213×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:49537×1).