cell shape
METPO:1000666 · CLASS · REVIEWED
A phenotype that describes the characteristic three-dimensional morphological form of a microbial cell, determined by cell wall structure, cytoskeletal elements, and environmental factors.
Bacterial cell-shape morphogenesis mechanism
Edge evidence
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peptidoglycan cell wall
regulates
cell shape
RO:0002211The peptidoglycan wall has a primary role in maintaining bacterial cell shape.
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DOI:10.1038/nrmicro1205primary role in maintaining cell shape
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penicillin-binding proteins
catalyzes
peptidoglycan synthesis
biolink:catalyzesPBPs synthesize and remodel peptidoglycan during growth and division.
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DOI:10.1038/nrmicro1205carry out the reactions for synthesis and remodelling
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peptidoglycan synthesis
causes
cell shape
biolink:causesSpatial regulation of wall synthesis determines growth morphology.
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DOI:10.1038/nrmicro2677peptidoglycan synthesis to bacterial growth and morphology
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MreB
positions
peptidoglycan synthesis
MreB helps organize or position peptidoglycan synthesis machinery.
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DOI:10.1038/nrmicro2677positions peptidoglycan biosynthesis machineries
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FtsZ
regulates
cell shape
RO:0002211FtsZ controls division-associated shape generation and septal wall synthesis.
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DOI:10.1038/nrmicro1205FtsZ is essential for cell division
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crescentin
contributes to
cell shape
RO:0002326Crescentin contributes to curved-rod cell shape in representative bacteria.
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DOI:10.1038/nrmicro1205crescentin is required for the curved-rod shape
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Rod complex (elongasome)
shapes
peptidoglycan architecture
The rod complex (elongasome) determines the overall shape and dense architecture of peptidoglycan.
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DOI:10.1002/mbo3.1385
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peptidoglycan architecture
regulates
cell shape
RO:0002211Peptidoglycan wall architecture underlies cell shape.
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DOI:10.1002/mbo3.1385
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MreB
organizes
rod shape
MreB coordinates with PG synthases to organize cell-wall synthesis for rod shape.
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DOI:10.1042/bsr20221664
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A22 (MreB inhibitor)
disrupts
rod shape
A22 reduces MreB filaments, causing loss of rod shape and lysis.
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DOI:10.1128/jb.00433-22
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cardiolipin / increased lipid order
inhibits
MreB
RO:0002212Increased lipid order or cardiolipin interferes with MreB assembly.
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DOI:10.1128/jb.00433-22
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flotillins
promotes
cell wall synthesis
RO:0002213Flotillins promote MreB activity and cell-wall synthesis via membrane organization.
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DOI:10.1128/jb.00433-22
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Provenance
- Source
- METPO (2025-11-25)
- Author
- Luke Wang
- Definition source
- DOI:10.1038/nrmicro1205
Parent traits (1)
Children (34)
- bacillus shaped
METPO:1000667 - branched shaped
METPO:1000687 - coccobacillus shaped
METPO:1000688 - coccus shaped
METPO:1000668 - crescent shaped
METPO:1000669 - curved shaped
METPO:1000670 - diplococcus shaped
METPO:1000671 - disc shaped
METPO:1000689 - dumbbell shaped
METPO:1000672 - ellipsoidal
METPO:1000673 - filament shaped
METPO:1000674 - flask shaped
METPO:1000675 - fusiform shaped
METPO:1000690 - helical shaped
METPO:1000676 - irregular shaped
METPO:1000691 - oval shaped
METPO:1000678 - ovoid shaped
METPO:1000677 - pleomorphic shaped
METPO:1000679 - ring shaped
METPO:1000680 - rod shaped
METPO:1000681 - sarcina arrangement
traitmech:000120 - sphere shaped
METPO:1000683 - spindle shaped
METPO:1000692 - spiral shaped
METPO:1000684 - spirochete shaped
METPO:1000693 - spore shaped
METPO:1000682 - square shaped
METPO:1000694 - staphylococcus arrangement
traitmech:000118 - star shaped
METPO:1000685 - streptococcus arrangement
traitmech:000117 - tailed shaped
METPO:1000695 - tetrad arrangement
traitmech:000119 - triangular shaped
METPO:1000696 - vibrio shaped
METPO:1000686
Synonyms (2)
- Morphology.cell morphology.cell shape
- cell_shape
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000666[-5.052, -3.981, -3.909, -0.718, …]
Nearest neighbors in embedding space
- morphology streptococcus arrangement 1.000
- morphology staphylococcus arrangement 1.000
- morphology tetrad arrangement 1.000
- morphology sarcina arrangement 1.000
- morphology crescent shaped 0.955
- morphology diplococcus shaped 0.905
- morphology dumbbell shaped 0.888
- morphology triangular shaped 0.877
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_LITERATURE · codex
Reviewed cell shape trait and added DOI-backed causal graph for peptidoglycan cell wall, PBPs, MreB, FtsZ, crescentin, and localized wall growth.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1, RO:0002326×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:catalyzes×1).
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RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0009252×1).
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GROUND_CAUSAL_NODES · claude
Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A1B1UYY2×1, UniProtKB:C0LUM8×1, UniProtKB:A0A2N9AY16×1).
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RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: determines → causes ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1, RO:0002212×1, RO:0002213×1).