cell shape

METPO:1000666 · CLASS · REVIEWED

A phenotype that describes the characteristic three-dimensional morphological form of a microbial cell, determined by cell wall structure, cytoskeletal elements, and environmental factors.

Bacterial cell-shape morphogenesis mechanism

Evidence-backed causal sketch linking cell shape to peptidoglycan synthesis, PBPs, MreB, FtsZ, crescentin, and localized wall growth.

Bacterial cell-shape morphogenesis mechanism Interactive directed graph showing evidence-backed causal relationships for cell shape.

Edge evidence

  • peptidoglycan cell wall regulates cell shape RO:0002211

    The peptidoglycan wall has a primary role in maintaining bacterial cell shape.

    • DOI:10.1038/nrmicro1205 primary role in maintaining cell shape Review supports peptidoglycan wall as central to cell shape.
  • penicillin-binding proteins catalyzes peptidoglycan synthesis biolink:catalyzes

    PBPs synthesize and remodel peptidoglycan during growth and division.

    • DOI:10.1038/nrmicro1205 carry out the reactions for synthesis and remodelling Supports PBPs in peptidoglycan synthesis/remodeling.
  • peptidoglycan synthesis causes cell shape biolink:causes

    Spatial regulation of wall synthesis determines growth morphology.

    • DOI:10.1038/nrmicro2677 peptidoglycan synthesis to bacterial growth and morphology Review supports regulated peptidoglycan synthesis as a determinant of morphology.
  • MreB positions peptidoglycan synthesis

    MreB helps organize or position peptidoglycan synthesis machinery.

    • DOI:10.1038/nrmicro2677 positions peptidoglycan biosynthesis machineries Supports MreB in spatial organization of cell-wall synthesis.
  • FtsZ regulates cell shape RO:0002211

    FtsZ controls division-associated shape generation and septal wall synthesis.

    • DOI:10.1038/nrmicro1205 FtsZ is essential for cell division Supports FtsZ as a shape-related cytoskeletal protein through cell division.
  • crescentin contributes to cell shape RO:0002326

    Crescentin contributes to curved-rod cell shape in representative bacteria.

    • DOI:10.1038/nrmicro1205 crescentin is required for the curved-rod shape Supports crescentin as a cell-shape determinant in Caulobacter.
  • Rod complex (elongasome) shapes peptidoglycan architecture

    The rod complex (elongasome) determines the overall shape and dense architecture of peptidoglycan.

    • DOI:10.1002/mbo3.1385 Rod complex may be a determinant for the whole shape of peptidoglycan and its highly dense structure.
  • peptidoglycan architecture regulates cell shape RO:0002211

    Peptidoglycan wall architecture underlies cell shape.

    • DOI:10.1002/mbo3.1385 Peptidoglycan determines cell shape (broad bacterial claim).
  • MreB organizes rod shape

    MreB coordinates with PG synthases to organize cell-wall synthesis for rod shape.

    • DOI:10.1042/bsr20221664 MreB coordinates with PG synthases and is linked to rod shape.
  • A22 (MreB inhibitor) disrupts rod shape

    A22 reduces MreB filaments, causing loss of rod shape and lysis.

    • DOI:10.1128/jb.00433-22 A22 reduces MreB filaments leading to loss of rod shape and lysis.
  • cardiolipin / increased lipid order inhibits MreB RO:0002212

    Increased lipid order or cardiolipin interferes with MreB assembly.

    • DOI:10.1128/jb.00433-22 Increased lipid order or cardiolipin interferes with MreB assembly.
  • flotillins promotes cell wall synthesis RO:0002213

    Flotillins promote MreB activity and cell-wall synthesis via membrane organization.

    • DOI:10.1128/jb.00433-22 Absence of flotillins downregulates MreB activity and cell wall synthesis.

Provenance

Source
METPO (2025-11-25)
Author
Luke Wang
Definition source
DOI:10.1038/nrmicro1205

Parent traits (1)

Synonyms (2)

  • Morphology.cell morphology.cell shape RELATED_SYNONYM · metpo.owl
  • cell_shape RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000666 [-5.052, -3.981, -3.909, -0.718, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Reviewed cell shape trait and added DOI-backed causal graph for peptidoglycan cell wall, PBPs, MreB, FtsZ, crescentin, and localized wall growth.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1, RO:0002326×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:catalyzes×1).

  5. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: maintains → regulates ×1.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0009252×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A1B1UYY2×1, UniProtKB:C0LUM8×1, UniProtKB:A0A2N9AY16×1).

  9. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: determines → causes ×1.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  11. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (7 new nodes) from the deep-research report.

  12. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1, RO:0002212×1, RO:0002213×1).