coccobacillus shaped
METPO:1000688 · CLASS · REVIEWED
A cell shape intermediate between spherical cocci and elongated bacilli, typically appearing as short or plump rods.
Coccobacillus short-rod morphogenesis mechanism
Edge evidence
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MreB
controls
peptidoglycan synthesis
RO:0002211MreB contributes to control of peptidoglycan synthetic complexes.
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DOI:10.1128/JB.187.1.54-64.2005control of the peptidoglycan synthetic complexes
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peptidoglycan synthesis
causes
short-rod geometry
biolink:causesWall synthesis patterns determine whether cells remain rod-like or become short coccobacilli.
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DOI:10.1128/JB.187.1.54-64.2005conditions causing changes in cell shape
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septal growth
contributes to
short-rod geometry
RO:0002326Division-associated septal growth contributes to the short-rod intermediate geometry.
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DOI:10.1128/JB.187.1.54-64.2005role at mid-cell ... in early septation
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short-rod geometry
produces
coccobacillus shaped
METPO:2000202Short-rod geometry produces the coccobacillus-shaped trait.
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DOI:10.1128/JB.187.1.54-64.2005from a rod to coccobacillus
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RodA/PBP3 elongasome
increases
cell length-to-width ratio
RO:0002213Elongasome-driven lateral wall synthesis increases the long-to-short axis ratio, opposing a coccoid shape.
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DOI:10.1128/mBio.03235-23
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cell length-to-width ratio
determines
short-rod geometry
A reduced but non-coccoid length-to-width ratio defines the short-rod geometry of coccobacilli.
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DOI:10.1128/mBio.03235-23
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GpsB
regulates
PBP2 localization
RO:0002211GpsB regulates the localization of PBP2 between cell periphery and division septum.
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DOI:10.1128/mBio.03235-23
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PBP2 localization
controls
peptidoglycan synthesis
RO:0002211Spatial localization of PBP2 controls where peptidoglycan insertion and crosslinking occur, biasing cells toward elongation or rounding.
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DOI:10.1128/mBio.03235-23
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FtsZ filament properties
directs
peptidoglycan synthesis
RO:0002211FtsZ filament geometry directs asymmetric, helical patterns of cell-wall insertion.
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DOI:10.1128/mBio.00908-16
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PBP2 (elongasome transpeptidase)
required for
short-rod geometry
PBP2 transpeptidase activity within the RodA-PBP2 elongasome is required to maintain non-spherical rod/short-rod geometry.
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DOI:10.1073/pnas.2215237120
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1128/JB.187.1.54-64.2005
Parent traits (1)
Synonyms (1)
- coccobacillus
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000688[-20.154, -47.811, +18.193, -1.988, …]
Nearest neighbors in embedding space
- morphology ovoid shaped 0.438
- environment extremely halophilic 0.303
- environment non halophilic 0.238
- physiology autotrophic 0.206
- environment NaCl optimum mid2 0.189
- morphology non motile 0.176
- morphology branched shaped 0.174
- morphology disc shaped 0.170
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_LITERATURE · codex
Added DOI-backed definition and causal graph for MreB, peptidoglycan synthesis, septal growth, and short-rod coccobacillus geometry.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1, METPO:2000202×1).
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).
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·
RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: shapes → causes ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0009252×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A1B1UYY2×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×3, RO:0002213×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A060RK42×1).