coccobacillus shaped

METPO:1000688 · CLASS · REVIEWED

A cell shape intermediate between spherical cocci and elongated bacilli, typically appearing as short or plump rods.

Coccobacillus short-rod morphogenesis mechanism

Evidence-backed causal sketch linking coccobacillus shape to peptidoglycan synthesis, MreB-associated elongation, septal growth, and reduced length-to-width ratio.

Coccobacillus short-rod morphogenesis mechanism Interactive directed graph showing evidence-backed causal relationships for coccobacillus shaped.

Edge evidence

  • MreB controls peptidoglycan synthesis RO:0002211

    MreB contributes to control of peptidoglycan synthetic complexes.

    • DOI:10.1128/JB.187.1.54-64.2005 control of the peptidoglycan synthetic complexes Supports MreB involvement in shape-related PG synthesis.
  • peptidoglycan synthesis causes short-rod geometry biolink:causes

    Wall synthesis patterns determine whether cells remain rod-like or become short coccobacilli.

    • DOI:10.1128/JB.187.1.54-64.2005 conditions causing changes in cell shape Supports PG-associated shape changes to a coccobacillus state.
  • septal growth contributes to short-rod geometry RO:0002326

    Division-associated septal growth contributes to the short-rod intermediate geometry.

    • DOI:10.1128/JB.187.1.54-64.2005 role at mid-cell ... in early septation Supports a septation-linked role for MreB in representative coccobacillus-forming cells.
  • short-rod geometry produces coccobacillus shaped METPO:2000202

    Short-rod geometry produces the coccobacillus-shaped trait.

    • DOI:10.1128/JB.187.1.54-64.2005 from a rod to coccobacillus Supports the trait endpoint as a short-rod morphology.
  • RodA/PBP3 elongasome increases cell length-to-width ratio RO:0002213

    Elongasome-driven lateral wall synthesis increases the long-to-short axis ratio, opposing a coccoid shape.

    • DOI:10.1128/mBio.03235-23 This elongation depends on the SEDS/PBP pair RodA/PBP3 and is seen as an increased ratio of long to short cell axes.
  • cell length-to-width ratio determines short-rod geometry

    A reduced but non-coccoid length-to-width ratio defines the short-rod geometry of coccobacilli.

    • DOI:10.1128/mBio.03235-23 Long-to-short cell axis ratio quantifies the elongation state intermediate between coccus and rod.
  • GpsB regulates PBP2 localization RO:0002211

    GpsB regulates the localization of PBP2 between cell periphery and division septum.

    • DOI:10.1128/mBio.03235-23 a gpsB mutant shows the strongest morphological phenotype, driven by partial delocalization of PBP2 and PBP4 away from the division septum.
  • PBP2 localization controls peptidoglycan synthesis RO:0002211

    Spatial localization of PBP2 controls where peptidoglycan insertion and crosslinking occur, biasing cells toward elongation or rounding.

    • DOI:10.1128/mBio.03235-23 Increased PBP2/PBP4 at the cell periphery raises peptidoglycan insertion and crosslinking throughout the cell, impairing elongation.
  • FtsZ filament properties directs peptidoglycan synthesis RO:0002211

    FtsZ filament geometry directs asymmetric, helical patterns of cell-wall insertion.

    • DOI:10.1128/mBio.00908-16 altered FtsZ filaments direct asymmetric, helical cell-wall insertion, generating elongation; this helical pattern of wall insertion leads to elongation.
  • PBP2 (elongasome transpeptidase) required for short-rod geometry

    PBP2 transpeptidase activity within the RodA-PBP2 elongasome is required to maintain non-spherical rod/short-rod geometry.

    • DOI:10.1073/pnas.2215237120 Loss of RodA-PBP2 elongasome activity drives a rod-to-sphere transition; PBP2 transpeptidase activity is required for rod-shape maintenance.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1128/JB.187.1.54-64.2005

Parent traits (1)

Synonyms (1)

  • coccobacillus RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000688 [-20.154, -47.811, +18.193, -1.988, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Added DOI-backed definition and causal graph for MreB, peptidoglycan synthesis, septal growth, and short-rod coccobacillus geometry.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1, METPO:2000202×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  5. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: shapes → causes ×1.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0009252×1).

  8. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A1B1UYY2×1).

  9. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×3, RO:0002213×1).

  11. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A060RK42×1).