non halophilic

METPO:1000624 · CLASS · REVIEWED

A halophily preference in which an organism does not require or prefer elevated salt concentrations for growth.

Non-halophilic salt-stress response mechanism

Evidence-backed causal sketch linking non-halophily to lack of salt requirement, high-osmolarity stress, potassium uptake, and compatible-solute protection.

Non-halophilic salt-stress response mechanism Interactive directed graph showing evidence-backed causal relationships for non halophilic.

Edge evidence

  • low-to-moderate salinity enables non halophilic RO:0002327

    Non-halophilic organisms do not require elevated salinity for growth.

    • DOI:10.1128/AEM.01934-12 soil-dwelling bacterium Bacillus subtilis Bacillus subtilis is used here as a non-halophilic model for salt stress responses rather than salt-requiring growth.
  • high osmolarity regulates water flux across cytoplasmic membrane RO:0002211

    Hyperosmotic stress alters cellular water balance and can impair non-halophilic growth.

    • DOI:10.1128/AEM.01934-12 outflow of water, drop in turgor, and the ensuing growth arrest Supports high-osmolarity growth inhibition through water loss and turgor decrease.
  • potassium ion mitigates water flux across cytoplasmic membrane METPO:2007407

    Rapid potassium accumulation helps adjust cytoplasmic osmotic potential after osmotic upshift.

    • DOI:10.1128/AEM.01934-12 initially importing substantial amounts of potassium ions Supports potassium uptake as an initial osmotic response.
  • proline mitigates water flux across cytoplasmic membrane METPO:2007407

    Proline accumulation supports osmoadaptation under sustained high-osmolarity conditions.

    • DOI:10.1128/JB.00778-11 proline production is required Supports de novo proline synthesis in Bacillus subtilis osmotic defense.
  • compatible-solute uptake systems imports proline METPO:2000208

    Uptake systems can import osmoprotectants that relieve high osmolarity.

    • DOI:10.1128/AEM.01934-12 osmotically controlled uptake systems Supports uptake systems for compatible solutes in Bacillus subtilis.
  • proline enables tolerance of high osmolarity

    Proline acts as an osmoprotectant enabling survival or growth under salt stress without making salt a growth requirement.

    • DOI:10.1128/AEM.01934-12 proline as an osmoprotectant Supports proline-mediated protection in a non-halophilic bacterial model.
  • osmotic upshift causes water efflux and cytoplasmic volume decrease biolink:causes

    Hypertonic stress drives rapid water efflux and cytoplasmic volume/turgor decrease.

    • DOI:10.1128/mmbr.00181-23 Under hypertonic stress water exits cells within milliseconds, causing cytoplasmic volume decreases up to ~50%, a rapid fall in turgor and increased ionic strength.
  • osmotic upshift induces rapid potassium uptake

    Cells import large amounts of K+ as the primary emergency response to osmotic upshift.

    • DOI:10.1128/mmbr.00181-23 Cells commonly import large amounts of K+ during osmotic upshift; generic across non-halophilic bacteria.
  • rapid potassium uptake requires counterion balancing by L-glutamate

    Glutamate is imported or synthesized as the counterion to balance accumulated K+ and maintain electroneutrality.

    • DOI:10.1128/mmbr.00181-23 Glutamate commonly imported or synthesized as the counterion to maintain electroneutrality during K+ accumulation.
  • rapid potassium uptake promotes replacement by compatible solute accumulation

    High intracellular K+/ionic strength is mitigated by secondary accumulation of neutral compatible solutes that replace K+.

    • DOI:10.1128/mmbr.00181-23 Bacteria such as E. coli and B. subtilis accumulate/synthesize neutral compatible solutes to replace K+; compatible-solute accumulation is a secondary response following primary K+ accumulation.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1128/AEM.01934-12

Synonyms (1)

  • non-halophilic RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000624 [-6.997, -46.693, +70.873, -15.746, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_ORGANISM_EXAMPLE · codex

    Added Vibrio cholerae non-O1 organism example with PMID-backed evidence.

  3. · CURATED_WITH_LITERATURE · codex

    Added DOI-backed non-halophilic causal graph for salt-stress response in a non-halophilic Bacillus model, including K+ uptake, proline, and compatible-solute uptake systems.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×2).

  5. · RENAME_PREDICATE_LABELS · claude

    Renamed 2 causal-edge predicate label(s) to align with existing groundings: supports → enables ×1; drives → regulates ×1.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, RO:0002211×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001657×1).

  8. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000208×1).

  9. · ENRICH_CAUSAL_GRAPH · claude

    Added 4 evidence-backed generic edges (5 new nodes) from the deep-research report.

  10. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).