non halophilic
METPO:1000624 · CLASS · REVIEWED
A halophily preference in which an organism does not require or prefer elevated salt concentrations for growth.
Non-halophilic salt-stress response mechanism
Edge evidence
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low-to-moderate salinity
enables
non halophilic
RO:0002327Non-halophilic organisms do not require elevated salinity for growth.
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DOI:10.1128/AEM.01934-12soil-dwelling bacterium Bacillus subtilis
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high osmolarity
regulates
water flux across cytoplasmic membrane
RO:0002211Hyperosmotic stress alters cellular water balance and can impair non-halophilic growth.
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DOI:10.1128/AEM.01934-12outflow of water, drop in turgor, and the ensuing growth arrest
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potassium ion
mitigates
water flux across cytoplasmic membrane
METPO:2007407Rapid potassium accumulation helps adjust cytoplasmic osmotic potential after osmotic upshift.
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DOI:10.1128/AEM.01934-12initially importing substantial amounts of potassium ions
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proline
mitigates
water flux across cytoplasmic membrane
METPO:2007407Proline accumulation supports osmoadaptation under sustained high-osmolarity conditions.
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DOI:10.1128/JB.00778-11proline production is required
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compatible-solute uptake systems
imports
proline
METPO:2000208Uptake systems can import osmoprotectants that relieve high osmolarity.
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DOI:10.1128/AEM.01934-12osmotically controlled uptake systems
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proline
enables tolerance of
high osmolarity
Proline acts as an osmoprotectant enabling survival or growth under salt stress without making salt a growth requirement.
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DOI:10.1128/AEM.01934-12proline as an osmoprotectant
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osmotic upshift
causes
water efflux and cytoplasmic volume decrease
biolink:causesHypertonic stress drives rapid water efflux and cytoplasmic volume/turgor decrease.
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DOI:10.1128/mmbr.00181-23
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osmotic upshift
induces
rapid potassium uptake
Cells import large amounts of K+ as the primary emergency response to osmotic upshift.
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DOI:10.1128/mmbr.00181-23
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rapid potassium uptake
requires counterion balancing by
L-glutamate
Glutamate is imported or synthesized as the counterion to balance accumulated K+ and maintain electroneutrality.
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DOI:10.1128/mmbr.00181-23
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rapid potassium uptake
promotes replacement by
compatible solute accumulation
High intracellular K+/ionic strength is mitigated by secondary accumulation of neutral compatible solutes that replace K+.
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DOI:10.1128/mmbr.00181-23
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1128/AEM.01934-12
Parent traits (1)
Synonyms (1)
- non-halophilic
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000624[-6.997, -46.693, +70.873, -15.746, …]
Nearest neighbors in embedding space
- morphology branched shaped 0.326
- environment halophily preference 0.285
- morphology vibrio shaped 0.284
- morphology filament shaped 0.275
- morphology spiral shaped 0.268
- morphology spore forming 0.263
- environment euryhaline 0.262
- environment hyperthermophilic 0.257
Curation history
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SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_ORGANISM_EXAMPLE · codex
Added Vibrio cholerae non-O1 organism example with PMID-backed evidence.
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CURATED_WITH_LITERATURE · codex
Added DOI-backed non-halophilic causal graph for salt-stress response in a non-halophilic Bacillus model, including K+ uptake, proline, and compatible-solute uptake systems.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×2).
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RENAME_PREDICATE_LABELS · claude
Renamed 2 causal-edge predicate label(s) to align with existing groundings: supports → enables ×1; drives → regulates ×1.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1, RO:0002211×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (PATO:0001657×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000208×1).
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ENRICH_CAUSAL_GRAPH · claude
Added 4 evidence-backed generic edges (5 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).