filament shaped

METPO:1000674 · CLASS · REVIEWED

A cell shape in which an organism grows as elongated filamentous cells or hypha-like structures.

Filament-shape Streptomyces polar growth mechanism

Evidence-backed causal sketch linking filamentous morphology to DivIVA/Scy polarisomes, apical peptidoglycan synthesis, and hyphal tip extension.

Filament-shape Streptomyces polar growth mechanism Interactive directed graph showing evidence-backed causal relationships for filament shaped.

Edge evidence

  • DivIVA localizes to apical polarisome biolink:located_in

    DivIVA localizes at hyphal tips as part of the polar growth machinery.

    • DOI:10.1016/j.mib.2010.10.002 polarity determinant DivIVA Supports DivIVA as a polarity determinant in Streptomyces.
  • Scy enables apical polarisome RO:0002327

    Scy is a component of the tip-organizing center controlling polar growth.

    • DOI:10.1371/journal.pgen.1002423 tip organizing center Supports Scy/DivIVA assemblies in Streptomyces polarized growth.
  • apical polarisome recruits apical peptidoglycan synthesis

    The apical polarisome recruits cell-wall synthesis machinery to hyphal tips.

    • DOI:10.1016/j.mib.2012.10.012 polarisome-like complex involving the essential polarity protein DivIVA Supports polarisome-directed apical growth and cell-wall assembly.
  • apical peptidoglycan synthesis regulates hyphal tip extension RO:0002211

    Localized wall synthesis at the tip drives filament extension.

    • DOI:10.1038/s41564-025-02080-x DivIVA drives growth at the hyphal poles Supports DivIVA-recruited PG synthesis at hyphal poles.
  • hyphal tip extension manifests as filament shaped METPO:2007400

    Hyphal tip extension manifests filamentous morphology.

    • DOI:10.1016/j.mib.2010.10.002 Streptomyces hyphae Supports filamentous hyphal morphology as the trait endpoint.
  • RecA/LexA SOS response induces SulA

    DNA damage activates the RecA/LexA SOS response, inducing the division inhibitor SulA.

    • DOI:10.1002/advs.202203260 DNA damage activates the RecA/LexA SOS response, leading to expression of sulA.
  • SulA inhibits FtsZ polymerization RO:0002212

    SulA blocks FtsZ polymerization, preventing Z-ring assembly and septation.

    • DOI:10.1002/advs.202203260 A cell division inhibitor, sulA, blocks FtsZ / SulA interferes with FtsZ polymerization.
  • FtsZ polymerization regulates filament shaped RO:0002211

    Inhibited FtsZ polymerization blocks septation, causing non-septate filamentation.

    • DOI:10.1002/advs.202203260 FtsZ inhibition / blocked septation contributes to non-septate cellular filamentation.
  • apical polarisome enables polar hyphal growth RO:0002327

    The DivIVA/polarisome assembly mediates polar growth at hyphal tips.

    • DOI:10.1128/jb.00153-23 Hyphal growth occurs at the tips of the filamentous cells; this polar growth is mediated by DivIVA.
  • apical polarisome promotes hyphal branch emergence RO:0002213

    Splitting of polarisomes at tips produces daughter polarisomes that coordinate new branch emergence.

    • DOI:10.1093/femsml/uqad020 DivIVA forms discrete foci at growing tips; splitting of polarisomes produces daughter polarisomes coordinating emergence of new branches.
  • CglA enables cell-wall glycopolymer attachment RO:0002327

    CglA is the glycopolymer ligase mediating attachment of glycopolymers to the cell wall.

    • DOI:10.1128/mbio.01492-24 Identified the LCP-LytR_C domain protein CglA as a key glycopolymer ligase.
  • cell-wall glycopolymer attachment regulates filament shaped RO:0002211

    Reduced glycopolymer attachment results in enlarged vegetative hyphae and loss of hyphal cell shape.

    • DOI:10.1128/mbio.01492-24 Reduced amount of glycopolymers in the cglA mutant results in enlarged vegetative hyphae.

Provenance

Source
METPO (2025-11-25)
Author
Luke Wang
Definition source
DOI:10.1016/j.mib.2010.10.002

Parent traits (1)

Synonyms (3)

  • S_filament RELATED_SYNONYM · metpo.owl
  • filament RELATED_SYNONYM · metpo.owl
  • filament-shaped RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000674 [+1.704, -8.992, +4.797, -2.737, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Added DOI-backed definition and causal graph for DivIVA, Scy, apical polarisome, apical peptidoglycan synthesis, and hyphal tip extension.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:located_in×1).

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007400×1).

  5. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: drives → regulates ×1.

  6. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  7. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:Q1IYG2×1, UniProtKB:A0A191V3Q4×1).

  8. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: organizes → enables ×1.

  9. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).

  10. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (7 new nodes) from the deep-research report.

  11. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 6 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×2, RO:0002327×2, RO:0002212×1, RO:0002213×1).

  12. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:H8YHZ0×1, UniProtKB:A0A0C1K447×1).