branched shaped
METPO:1000687 · CLASS · REVIEWED
A cell shape in which an organism forms lateral branches from filamentous or hyphal cells.
Branched-shape Streptomyces branch-site mechanism
Edge evidence
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DivIVA foci
marks
branch-site selection
DivIVA foci mark sites where lateral branches will emerge.
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DOI:10.1371/journal.pgen.1002423mark sites of future branch outgrowth
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branch-site selection
controls
polarisome behavior
RO:0002211Branch-site selection controls where new polar growth machinery is established.
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DOI:10.1016/j.mib.2012.10.012principal mechanism of branch site selection
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polarisome behavior
directs
local cell-wall assembly
RO:0002211Polarisome behavior directs local wall assembly at the branch site.
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DOI:10.1016/j.mib.2012.10.012modulate polar growth and hyphal branching
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local cell-wall assembly
regulates
lateral branch outgrowth
RO:0002211Local wall assembly drives emergence of the lateral branch.
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DOI:10.1016/j.mib.2012.10.012apical growth requires the localization of the machinery
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lateral branch outgrowth
manifests as
branched shaped
METPO:2007400Lateral branch outgrowth manifests the branched-shape phenotype.
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DOI:10.1016/j.mib.2012.10.012initiation of new branches
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DivIVA polarisome splitting
causes
lateral branch outgrowth
biolink:causesPolarisome splitting at growing tips generates daughter polarisomes that coordinate new lateral branch emergence.
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DOI:10.1093/femsml/uqad020
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DivIVA/Scy/FilP polarisome
localizes
localization of peptidoglycan synthases and hydrolases to the apex
The DivIVA/Scy/FilP polarisome localizes peptidoglycan synthases and hydrolases to the apex.
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DOI:10.1128/mbio.01492-24
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AfsK-mediated DivIVA phosphorylation
stimulates
multiple new polarisomes and hyperbranching
AfsK-mediated DivIVA phosphorylation disassembles the apical polarisome and stimulates multiple new polarisomes.
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DOI:10.1093/femsml/uqad020
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SppA dephosphorylation of DivIVA
opposes
multiple new polarisomes and hyperbranching
SppA dephosphorylation of DivIVA opposes AfsK-driven hyperbranching, defining a reversible branching-control circuit.
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DOI:10.1093/femsml/uqad020
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cell-wall stress (bacitracin/vancomycin)
activates
AfsK-mediated DivIVA phosphorylation
RO:0002213Cell-wall stress activates AfsK-dependent DivIVA phosphorylation.
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DOI:10.1093/femsml/uqad020
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StlP membrane microdomain formation
enables
proper polar growth and normal branch spacing
RO:0002327StlP membrane microdomain formation enables proper polar growth and normal branch spacing.
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DOI:10.1038/s41467-025-58093-x
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1016/j.mib.2012.10.012
Parent traits (1)
Synonyms (2)
- branced
- branched
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000687[-3.113, -4.524, -0.722, -1.425, …]
Nearest neighbors in embedding space
- morphology crescent shaped 0.799
- morphology tetrad arrangement 0.794
- morphology cell shape 0.794
- morphology streptococcus arrangement 0.794
- morphology staphylococcus arrangement 0.794
- morphology sarcina arrangement 0.794
- morphology diplococcus shaped 0.763
- morphology tailed shaped 0.761
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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·
CURATED_WITH_LITERATURE · codex
Added DOI-backed definition and causal graph for DivIVA foci, branch-site selection, polarisome behavior, local cell-wall assembly, and lateral branch outgrowth.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×2, METPO:2007400×1).
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·
RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: drives → regulates ×1.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).
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·
ENRICH_CAUSAL_GRAPH · claude
Added 6 evidence-backed generic edges (9 new nodes) from the deep-research report.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, RO:0002213×1, RO:0002327×1).