branched shaped

METPO:1000687 · CLASS · REVIEWED

A cell shape in which an organism forms lateral branches from filamentous or hyphal cells.

Branched-shape Streptomyces branch-site mechanism

Evidence-backed causal sketch linking branched morphology to DivIVA foci, branch-site selection, polarisome behavior, local peptidoglycan assembly, and lateral branch outgrowth.

Branched-shape Streptomyces branch-site mechanism Interactive directed graph showing evidence-backed causal relationships for branched shaped.

Edge evidence

  • DivIVA foci marks branch-site selection

    DivIVA foci mark sites where lateral branches will emerge.

    • DOI:10.1371/journal.pgen.1002423 mark sites of future branch outgrowth Supports DivIVA foci as branch-site markers.
  • branch-site selection controls polarisome behavior RO:0002211

    Branch-site selection controls where new polar growth machinery is established.

    • DOI:10.1016/j.mib.2012.10.012 principal mechanism of branch site selection Supports branch-site selection as a regulated mechanism.
  • polarisome behavior directs local cell-wall assembly RO:0002211

    Polarisome behavior directs local wall assembly at the branch site.

    • DOI:10.1016/j.mib.2012.10.012 modulate polar growth and hyphal branching Supports polarisome modulation of polar growth and branching.
  • local cell-wall assembly regulates lateral branch outgrowth RO:0002211

    Local wall assembly drives emergence of the lateral branch.

    • DOI:10.1016/j.mib.2012.10.012 apical growth requires the localization of the machinery Supports localized wall-building machinery as needed for apical branch outgrowth.
  • lateral branch outgrowth manifests as branched shaped METPO:2007400

    Lateral branch outgrowth manifests the branched-shape phenotype.

    • DOI:10.1016/j.mib.2012.10.012 initiation of new branches Supports branched morphology as a Streptomyces growth phenotype.
  • DivIVA polarisome splitting causes lateral branch outgrowth biolink:causes

    Polarisome splitting at growing tips generates daughter polarisomes that coordinate new lateral branch emergence.

    • DOI:10.1093/femsml/uqad020 Splitting of polarisomes at growing tips generates daughter polarisomes that coordinate emergence of new lateral branches upon reaching a critical size.
  • DivIVA/Scy/FilP polarisome localizes localization of peptidoglycan synthases and hydrolases to the apex

    The DivIVA/Scy/FilP polarisome localizes peptidoglycan synthases and hydrolases to the apex.

    • DOI:10.1128/mbio.01492-24 The polarisome composed of DivIVA with Scy and FilP localizes cell-wall enzymes to one pole, linking polarity establishment to branching.
  • AfsK-mediated DivIVA phosphorylation stimulates multiple new polarisomes and hyperbranching

    AfsK-mediated DivIVA phosphorylation disassembles the apical polarisome and stimulates multiple new polarisomes.

    • DOI:10.1093/femsml/uqad020 Constitutive AfsK activity/high DivIVA phosphorylation disassembles the apical polarisome and stimulates multiple new polarisomes, producing a hyperbranching phenotype.
  • SppA dephosphorylation of DivIVA opposes multiple new polarisomes and hyperbranching

    SppA dephosphorylation of DivIVA opposes AfsK-driven hyperbranching, defining a reversible branching-control circuit.

    • DOI:10.1093/femsml/uqad020 AfsK phosphorylates DivIVA in response to bacitracin/vancomycin stress, while SppA dephosphorylates DivIVA, defining a reversible branching-control circuit.
  • cell-wall stress (bacitracin/vancomycin) activates AfsK-mediated DivIVA phosphorylation RO:0002213

    Cell-wall stress activates AfsK-dependent DivIVA phosphorylation.

    • DOI:10.1093/femsml/uqad020 AfsK phosphorylates DivIVA in response to cell-wall stress (e.g., bacitracin, vancomycin).
  • StlP membrane microdomain formation enables proper polar growth and normal branch spacing RO:0002327

    StlP membrane microdomain formation enables proper polar growth and normal branch spacing.

    • DOI:10.1038/s41467-025-58093-x Loss of StlP leads to branching of filaments; constitutive stlP expression notably reduces lateral branching and increases tip-to-branch distance.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1016/j.mib.2012.10.012

Parent traits (1)

Synonyms (2)

  • branced RELATED_SYNONYM · metpo.owl
  • branched RELATED_SYNONYM · corrected-from-metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000687 [-3.113, -4.524, -0.722, -1.425, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_LITERATURE · codex

    Added DOI-backed definition and causal graph for DivIVA foci, branch-site selection, polarisome behavior, local cell-wall assembly, and lateral branch outgrowth.

  3. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×2, METPO:2007400×1).

  4. · RENAME_PREDICATE_LABELS · claude

    Renamed 1 causal-edge predicate label(s) to align with existing groundings: drives → regulates ×1.

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002211×1).

  6. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (9 new nodes) from the deep-research report.

  7. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1, RO:0002213×1, RO:0002327×1).