sarcina arrangement

traitmech:000120 · CLASS · REVIEWED

A cell arrangement in which cocci divide in three perpendicular planes and remain attached as cubic packets of eight (sarcinae).

Sarcina arrangement via three-plane perpendicular division

Evidence-backed causal sketch linking division in three perpendicular planes with incomplete separation to cubic eight-cell packets.

Sarcina arrangement via three-plane perpendicular division Interactive directed graph showing evidence-backed causal relationships for sarcina arrangement.

Edge evidence

  • three perpendicular division planes causes sarcina arrangement biolink:causes

    Three perpendicular division planes with incomplete separation yield cubic eight-cell packets.

    • DOI:10.1038/ncomms4842 Three-plane division with incomplete daughter-cell separation yields cubic eight-cell packets.
  • cell division enables sarcina arrangement RO:0002327

    Bacterial cell division underlies sarcina packet formation.

    • DOI:10.1128/MMBR.00001-06 Young treats the sarcina cubic packet as a division-plane-determined coccal arrangement.
  • FtsZ polymerizes to form Z ring

    FtsZ polymerizes to form the dynamic Z ring at the division site.

    • DOI:10.1002/mbo3.1338 FtsZ polymerizes to form a dynamic structure known as the Z ring; broadly conserved bacterial/coccal mechanism.
  • FtsA attaches Z ring

    FtsA tethers the Z ring to the cytoplasmic membrane for proper divisome assembly.

    • DOI:10.1002/mbo3.1338 Proper Z ring assembly requires attachment to the cytoplasmic membrane via interactions with FtsA; general divisome mechanism.
  • FtsA attaches Z ring to cytoplasmic membrane

    FtsA attaches the Z ring to the cytoplasmic membrane.

    • DOI:10.1002/mbo3.1338 Z ring attachment to the cytoplasmic membrane occurs via interactions with FtsA.
  • peptidoglycan synthetases and hydrolases cooperate in septal peptidoglycan remodeling

    PG synthetases and hydrolases work together to build the septal cross-wall.

    • DOI:10.1002/mbo3.1338 PG synthetases and hydrolases work together to incorporate new PG into the existing mesh and to make the septal cross wall; general cell-wall remodeling principle.
  • cell wall synthesis at division site drives division septum formation

    FtsZ-dependent cell wall synthesis at the division site drives septum formation.

    • DOI:10.1111/j.1574-6976.2007.00098.x FtsZ-dependent cell wall synthesis is predominant; coccal cell wall synthesis occurs mainly at the division site, driving septation.
  • peptidoglycan hydrolases degrade peripheral peptidoglycan bridge

    Peptidoglycan hydrolases degrade the peripheral PG bridge connecting daughter cells.

    • DOI:10.1002/mbo3.1338 Hydrolases likely trigger cell splitting by degrading the peripheral bridge, not the entire septum; general separation mechanism.
  • peripheral peptidoglycan bridge degradation triggers daughter-cell separation

    Degradation of the peripheral PG bridge triggers daughter-cell splitting; incomplete separation retains packets.

    • DOI:10.1002/mbo3.1338 Degradation of the peripheral PG bridge, together with mechanical factors, results in a sudden crack that separates the cells; regulated/incomplete separation determines packet retention.

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1128/MMBR.00001-06

Parent traits (1)

Synonyms (1)

  • cubic packet cocci RELATED_SYNONYM · DOI:10.1128/MMBR.00001-06

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000666 [-5.052, -3.981, -3.909, -0.718, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate MORPHOLOGY trait (sarcina / cubic-packet arrangement); leftover round, cell-arrangement sibling of diplococcus shaped.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (three-plane perpendicular division → cubic packet) with GO node grounding and RO/biolink predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 7 evidence-backed generic edges (11 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:C0LUM8×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0000917×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A1M6DY20×1).