staphylococcus arrangement
traitmech:000118 · CLASS · REVIEWED
A cell arrangement in which dividing cocci form irregular three-dimensional grape-like clusters because division planes occur in multiple, non-orthogonal orientations and daughter cells remain attached.
Staphylococcus arrangement via multi-plane non-orthogonal division
Edge evidence
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multi-plane non-orthogonal division
causes
staphylococcus arrangement
biolink:causesMulti-plane non-orthogonal division with incomplete separation generates 3D coccal clusters.
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DOI:10.1038/ncomms4842
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cell division
enables
staphylococcus arrangement
RO:0002327Bacterial cell division underlies coccal cluster formation.
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DOI:10.1128/MMBR.00001-06
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FacZ
prevents aberrant placement of
FtsZ Z-ring
FacZ prevents aberrant membrane invaginations and multiple/mispositioned FtsZ cytokinetic rings.
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DOI:10.1038/s41564-024-01607-y
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FacZ
interacts with
GpsB
biolink:interacts_withFacZ directly interacts with the division regulator GpsB.
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DOI:10.1038/s41564-024-01607-y
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FacZ
antagonizes
GpsB
FacZ antagonizes GpsB to prevent spurious Z-ring formation and aberrant envelope invaginations.
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DOI:10.1038/s41564-024-01607-y
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GpsB
promotes lateral interactions between
FtsZ
GpsB promotes lateral interactions between FtsZ filaments.
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DOI:10.1038/s41564-024-01607-y
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FtsZ Z-ring
organizes
divisome peptidoglycan synthesis at division site
Treadmilling FtsZ Z-ring organizes the divisome peptidoglycan synthesis machinery at the division site.
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DOI:10.1038/s41564-024-01607-y
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- DOI:10.1128/MMBR.00001-06
Parent traits (1)
Synonyms (1)
- cluster-forming cocci
kg-microbe context
Matched 1 kg-microbe node via parent_proxy.
METPO:1000666[-5.052, -3.981, -3.909, -0.718, …]
Nearest neighbors in embedding space
- morphology sarcina arrangement 1.000
- morphology tetrad arrangement 1.000
- morphology cell shape 1.000
- morphology streptococcus arrangement 1.000
- morphology crescent shaped 0.955
- morphology diplococcus shaped 0.905
- morphology dumbbell shaped 0.888
- morphology triangular shaped 0.877
Curation history
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PROPOSED_FROM_RESEARCH · claude
Proposed candidate MORPHOLOGY trait (staphylococcus / cluster arrangement); leftover round, cell-arrangement sibling of diplococcus shaped.
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CURATED_CAUSAL_GRAPH · claude
Added evidence-backed causal graph (multi-plane non-orthogonal division → cluster) with GO node grounding and RO/biolink predicate groundings; promoted PROPOSED to REVIEWED.
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ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (5 new nodes) from the deep-research report.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:interacts_with×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:C0LUM8×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A060RK42×1).