staphylococcus arrangement

traitmech:000118 · CLASS · REVIEWED

A cell arrangement in which dividing cocci form irregular three-dimensional grape-like clusters because division planes occur in multiple, non-orthogonal orientations and daughter cells remain attached.

Staphylococcus arrangement via multi-plane non-orthogonal division

Evidence-backed causal sketch linking non-orthogonal multi-plane division and incomplete daughter-cell separation to irregular grape-like coccal clusters.

Staphylococcus arrangement via multi-plane non-orthogonal division Interactive directed graph showing evidence-backed causal relationships for staphylococcus arrangement.

Edge evidence

  • multi-plane non-orthogonal division causes staphylococcus arrangement biolink:causes

    Multi-plane non-orthogonal division with incomplete separation generates 3D coccal clusters.

    • DOI:10.1038/ncomms4842 Division-plane orientation and daughter-cell separation govern formation of three-dimensional coccal clusters.
  • cell division enables staphylococcus arrangement RO:0002327

    Bacterial cell division underlies coccal cluster formation.

    • DOI:10.1128/MMBR.00001-06 Young treats clustered coccal arrangement as a division-plane- determined heritable morphology.
  • FacZ prevents aberrant placement of FtsZ Z-ring

    FacZ prevents aberrant membrane invaginations and multiple/mispositioned FtsZ cytokinetic rings.

    • DOI:10.1038/s41564-024-01607-y "Inactivation of FacZ produced aberrant membrane invaginations and multiple FtsZ cytokinetic rings"; peer-reviewed S. aureus phenotype.
  • FacZ interacts with GpsB biolink:interacts_with

    FacZ directly interacts with the division regulator GpsB.

    • DOI:10.1038/s41564-024-01607-y "FacZ interacts directly with GpsB both in vitro and in vivo"; direct biochemical and cellular interaction.
  • FacZ antagonizes GpsB

    FacZ antagonizes GpsB to prevent spurious Z-ring formation and aberrant envelope invaginations.

    • DOI:10.1038/s41564-024-01607-y Authors propose FacZ antagonizes GpsB to prevent spurious Z-ring formation; peer-reviewed proposed model.
  • GpsB promotes lateral interactions between FtsZ

    GpsB promotes lateral interactions between FtsZ filaments.

    • DOI:10.1038/s41564-024-01607-y "GpsB itself interacts with FtsZ and promotes lateral interactions between FtsZ filaments."
  • FtsZ Z-ring organizes divisome peptidoglycan synthesis at division site

    Treadmilling FtsZ Z-ring organizes the divisome peptidoglycan synthesis machinery at the division site.

    • DOI:10.1038/s41564-024-01607-y "the septum is built by the divisome organized by treadmilling FtsZ polymers that form a dynamic Z-ring to establish the division site."

Provenance

Source
METPO (2025-11-25)
Definition source
DOI:10.1128/MMBR.00001-06

Parent traits (1)

Synonyms (1)

  • cluster-forming cocci RELATED_SYNONYM · DOI:10.1128/MMBR.00001-06

kg-microbe context

Matched 1 kg-microbe node via parent_proxy.

  • METPO:1000666 [-5.052, -3.981, -3.909, -0.718, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · PROPOSED_FROM_RESEARCH · claude

    Proposed candidate MORPHOLOGY trait (staphylococcus / cluster arrangement); leftover round, cell-arrangement sibling of diplococcus shaped.

  2. · CURATED_CAUSAL_GRAPH · claude

    Added evidence-backed causal graph (multi-plane non-orthogonal division → cluster) with GO node grounding and RO/biolink predicate groundings; promoted PROPOSED to REVIEWED.

  3. · ENRICH_CAUSAL_GRAPH · claude

    Added 5 evidence-backed generic edges (5 new nodes) from the deep-research report.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:interacts_with×1).

  5. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:C0LUM8×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A060RK42×1).