extremely halophilic

METPO:1000628 · CLASS · REVIEWED

A halophily preference in which an organism requires very high salt concentrations (typically 15-30% NaCl or higher) for optimal growth and cannot grow at salt concentrations below approximately 12%.

Extreme halophile salt-in and acidic-proteome mechanism

Evidence-backed causal sketch linking extreme halophily to saturated salt environments, intracellular KCl, and salt-adapted acidic proteins.

Extreme halophile salt-in and acidic-proteome mechanism Interactive directed graph showing evidence-backed causal relationships for extremely halophilic.

Edge evidence

  • hypersaline brine selects for extremely halophilic METPO:2007401

    Extreme halophiles are adapted to growth in hypersaline brines.

    • DOI:10.1093/femsre/fuy009 salt concentrations up to NaCl saturation Review supports saturated salt environments as extreme-halophile habitats.
  • salt-in strategy uses potassium ion

    Extreme haloarchaea often balance osmotic pressure by accumulating intracellular KCl.

    • DOI:10.1093/femsre/fuy009 KCl accumulating Halobacterium salinarum Supports KCl accumulation as a model salt-in strategy.
  • salt-in strategy enables extremely halophilic RO:0002327

    Maintaining high intracellular salt supports growth at extreme external salinity.

    • DOI:10.1038/srep25642 Salt-in strategy Haloarchaeal salinity-stress study describes salt-in adaptation in extreme halophiles.
  • acidic halophilic proteins enables extremely halophilic RO:0002327

    Acidic proteins remain soluble and functional in high salt.

    • DOI:10.1016/j.copbio.2015.05.004 negatively charged due to an excess of acidic over basic residues Review supports acidic proteomes as a molecular adaptation to hypersaline cytoplasm.
  • salt-in strategy requires adaptation of acidic halophilic proteins

    Intracellular salt accumulation requires proteins adapted to high ionic strength.

    • DOI:10.1016/j.copbio.2015.05.004 promote function in low water activity conditions Supports functional coupling between high-salt cytoplasm and salt-adapted proteins.
  • hypersaline brine causes osmotic stress biolink:causes

    High external NaCl imposes osmotic stress on the cell.

    • DOI:10.1186/s12934-024-02358-5 NaCl shock induced osmotic stress; environmental-to-stress edge broadly applicable.
  • osmotic stress induces potassium ion

    Osmotic stress triggers rapid intracellular K+ uptake/accumulation.

    • DOI:10.1186/s12934-024-02358-5 Many microbes rapidly uptake K+ as an emergency osmoadaptation response.
  • Na+/H+ antiporter mediates sodium efflux

    Na+/H+ antiporters drive sodium exclusion from the cytoplasm.

    • DOI:10.3390/microorganisms12081738 Sodium exclusion is mediated largely by Na+/H+ antiporters (general haloarchaeal review).
  • acidic halophilic proteins supports protein solubility and function in high salt

    Surface acidic residues maintain protein solubility and function at high ionic strength.

    • DOI:10.3390/microorganisms12081738 Halophilic proteins have increased surface acidic residues maintaining solubility and function in high salt.
  • S-layer glycoprotein N-glycosylation supports S-layer stability

    N-glycosylation stabilizes the haloarchaeal S-layer.

    • DOI:10.3390/v15071469 N-glycosylation supports protein folding/stability and specifically stabilizes the S-layer.
  • hypersaline brine changes S-layer glycoprotein N-glycosylation

    External salinity alters S-layer glycoprotein N-glycosylation pathways.

    • DOI:10.3390/v15071469 Growth at different salt concentrations alters S-layer glycoprotein N-glycosylation; two distinct pathways process it upon salinity changes.

Provenance

Source
METPO (2025-11-25)
Author
Jed Dongjin Kim-Ozaeta
Definition source
PMID:11790755

Synonyms (1)

  • extreme-halophilic RELATED_SYNONYM · metpo.owl

kg-microbe context

Matched 1 kg-microbe node via direct_metpo.

  • METPO:1000628 [-5.564, -4.889, -1.753, +2.203, …]

512-dim DeepWalkSkipGramEnsmallen embedding from kg-microbe (2026-04-25).

Nearest neighbors in embedding space

Top-8 cosine-similar METPO traits from the 2026-04-25 deepwalk (512-D).

Curation history

  1. · SEEDED_FROM_METPO · seed_from_metpo

    imported from data/raw/metpo.owl (CLASS)

  2. · CURATED_WITH_ORGANISM_EXAMPLE · codex

    Added Haloferax volcanii organism example with PMID-backed evidence.

  3. · ADDED_CAUSAL_GRAPH · codex

    Added DOI-backed causal graph for extreme halophile salt-in and acidic-proteome adaptation.

  4. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 2 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×2).

  5. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007401×1).

  6. · GROUND_CAUSAL_NODES · claude

    Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007720×1).

  7. · REMOVE_REDUNDANT_SYNONYM · claude

    Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).

  8. · ENRICH_CAUSAL_GRAPH · claude

    Added 6 evidence-backed generic edges (6 new nodes) from the deep-research report.

  9. · GROUND_CAUSAL_PREDICATES · claude

    Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).

  10. · GROUND_CAUSAL_NODES · claude

    Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006970×1, UniProtKB:A0A068T423×1).