slightly halophilic
METPO:1000625 · CLASS · REVIEWED
A halophily preference in which an organism requires low to moderate salt concentrations (0.3 to 0.8 M NaCl) for optimal growth.
Slight halophile low-salt osmoadaptation mechanism
Edge evidence
-
low to moderate NaCl
enables
slightly halophilic
RO:0002327Slight halophily is a salt-growth preference at lower salinity than moderate or extreme halophily.
-
DOI:10.1186/1746-1448-4-2minimum salt concentration required for growth
-
-
low to moderate NaCl
causes
osmotic stress
biolink:causesEven lower salinity preferences involve osmotic adjustment to environmental salt.
-
DOI:10.1186/1746-1448-4-2salt relationships
-
-
compatible solutes
mitigates
osmotic stress
METPO:2007407Compatible solutes provide osmotic balance without disrupting metabolism.
-
DOI:10.1371/journal.pone.0168818do not disturb the cell's metabolism
-
-
osmoprotectant transport
accumulates
compatible solutes
METPO:2000210Uptake systems can accumulate compatible solutes for salt adaptation.
-
DOI:10.1093/femsre/fuy009organic osmotic solutes
-
-
ectABC/ectBACD gene cluster
enables
ectoine biosynthesis
RO:0002327The ect gene cluster encodes the enzymes that carry out ectoine biosynthesis.
-
DOI:10.1128/aem.01905-23
-
-
ectoine biosynthesis
produces
ectoine
METPO:2000202Ectoine biosynthesis produces the compatible solute ectoine.
-
DOI:10.1128/aem.01905-23
-
-
ectoine
increases
salt tolerance
RO:0002213Accumulation of ectoine as a compatible solute increases salt tolerance.
-
DOI:10.1128/aem.01905-23
-
-
osmoprotectant transport
increases
salt tolerance
RO:0002213Uptake of compatible solutes is a general salt-out osmoadaptation strategy that raises salt tolerance.
-
DOI:10.1093/femsre/fuy026
-
-
Na+/K+ transcriptional induction
supports
ion homeostasis during salt stress
Coordinated induction of Na+/K+ transcription supports ion homeostasis during salt stress.
-
DOI:10.1038/s42003-022-04319-3
-
Provenance
- Source
- METPO (2025-11-25)
- Definition source
- PMID:12501437
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000625[-3.580, -0.620, -1.375, -1.507, …]
Nearest neighbors in embedding space
- environment halophily preference 0.904
- environment euryhaline 0.870
- environment haloalkaliphilic 0.837
- environment stenohaline 0.836
- environment halotolerant 0.592
- environment halophilic 0.576
- physiology quorum sensing 0.426
- morphology polyhydroxyalkanoate granule 0.426
Curation history
-
·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
-
·
CURATED_WITH_ORGANISM_EXAMPLE · codex
Added Paraliobacillus ryukyuensis organism example with PMID-backed evidence.
-
·
ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for slight halophile compatible-solute osmoadaptation.
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×1).
-
·
RENAME_PREDICATE_LABELS · claude
Renamed 1 causal-edge predicate label(s) to align with existing groundings: supports → enables ×1.
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002327×1).
-
·
GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006970×1, CHEBI:65015×1).
-
·
FIX_NODE_GROUNDING_CURIE · claude
Overwrote 1 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000210×1).
-
·
REMOVE_REDUNDANT_SYNONYM · claude
Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).
-
·
ENRICH_CAUSAL_GRAPH · claude
Added 5 evidence-backed generic edges (6 new nodes) from the deep-research report.
-
·
GROUND_CAUSAL_PREDICATES · claude
Grounded 4 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002213×2, RO:0002327×1, METPO:2000202×1).
-
·
GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0019491×1, CHEBI:27592×1).