halophilic
METPO:1000620 · CLASS · REVIEWED
A halophily preference in which an organism requires high concentrations of salt for growth and survival.
Halophilic osmoadaptation mechanism
Edge evidence
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high-salt environment
selects for
halophilic
METPO:2007401Halophilic microorganisms are adapted to growth in high-salt environments.
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DOI:10.1093/femsre/fuy009Hypersaline environments ... inhabited by halophilic
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sodium chloride
causes
osmotic stress
biolink:causesElevated NaCl creates osmotic pressure that requires cellular adaptation.
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DOI:10.1186/1746-1448-4-2ways they cope with the high salt concentrations
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compatible solutes
mitigates
osmotic stress
METPO:2007407Compatible solutes are one major osmoadaptation mechanism in halophilic microorganisms.
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DOI:10.1093/femsre/fuy009synthesize organic osmotic solutes
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salt-in strategy
mitigates
osmotic stress
METPO:2007407Salt-in ion accumulation is an alternative osmoadaptation strategy.
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DOI:10.1093/femsre/fuy009KCl accumulating Halobacterium salinarum
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compatible solutes
contributes to
halophilic
RO:0002326Compatible-solute accumulation supports growth under high salinity.
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DOI:10.1371/journal.pone.0168818allows microorganisms to cope with high salinities
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Na+/H+ antiporter
expels
sodium ion
Sodium is excluded from the cytoplasm with the help of an Na+/H+ antiporter.
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DOI:10.3390/microorganisms12081738
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K+ uniport system
imports
potassium ion
METPO:2000208Potassium enters the cell through a uniport system during salt-in osmoadaptation.
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DOI:10.3390/microorganisms12081738
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salt-in strategy
associated with
acidified proteome
biolink:associated_withOrganisms employing the salt-in strategy exhibit an acidified proteome.
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DOI:10.3390/microorganisms12081738
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sodium chloride
induces
oxidative stress
NaCl shock induces oxidative stress in addition to osmotic stress.
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DOI:10.1186/s12934-024-02358-5
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ectABC operon
biosynthesizes
ectoine
The conserved ectABC operon performs de novo biosynthesis of ectoine.
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DOI:10.1128/aem.00479-23
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L-aspartic acid
is precursor of
ectoine
Ectoine is biosynthesized de novo from L-aspartic acid.
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DOI:10.1128/aem.00479-23
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ectoine
is a
compatible solutes
rdfs:subClassOfEctoine is a major organic compatible solute used in osmoadaptation.
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DOI:10.1128/aem.00479-23
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Provenance
- Source
- METPO (2025-11-25)
- Definition source
- PMID:19329623
Parent traits (1)
kg-microbe context
Matched 1 kg-microbe node via direct_metpo.
METPO:1000620[-1.039, -0.924, -1.635, -0.067, …]
Nearest neighbors in embedding space
- environment slightly halophilic 0.576
- environment halophily preference 0.556
- environment euryhaline 0.522
- environment stenohaline 0.519
- environment haloalkaliphilic 0.510
- environment halotolerant 0.488
- physiology chemoautolithotrophic 0.476
- physiology chemoorganotrophic 0.446
Curation history
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·
SEEDED_FROM_METPO · seed_from_metpo
imported from data/raw/metpo.owl (CLASS)
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CURATED_WITH_ORGANISM_EXAMPLE · codex
Added Salinicoccus albus organism example with PMID-backed evidence.
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ADDED_CAUSAL_GRAPH · codex
Added DOI-backed causal graph for halophilic osmoadaptation mechanisms.
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (RO:0002326×1).
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GROUND_CAUSAL_PREDICATES · claude
Grounded 1 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (biolink:causes×1).
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2007407×2, METPO:2007401×1).
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GROUND_CAUSAL_NODES · claude
Grounded 2 causal-node grounding field(s) via mappings/node_grounding.tsv (GO:0006970×1, CHEBI:65015×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (ENVO:01000687×1).
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FIX_NODE_GROUNDING_CURIE · claude
Overwrote 2 causal-node grounding(s) to corrected CURIEs (phase-2 id-label fix; verified vs OAK).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (METPO:1007720×1).
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REMOVE_REDUNDANT_SYNONYM · claude
Removed 1 synonym(s) whose text duplicated the label (seeder redundancy; no information lost).
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ENRICH_CAUSAL_GRAPH · claude
Added 7 evidence-backed generic edges (9 new nodes) from the deep-research report.
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·
GROUND_CAUSAL_PREDICATES · claude
Grounded 3 causal-edge predicate_id field(s) via mappings/predicate_grounding.tsv (METPO:2000208×1, biolink:associated_with×1, rdfs:subClassOf×1).
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GROUND_CAUSAL_NODES · claude
Grounded 1 causal-node grounding field(s) via mappings/node_grounding.tsv (UniProtKB:A0A068T423×1).
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·
GROUND_CAUSAL_NODES · claude
Grounded 3 causal-node grounding field(s) via mappings/node_grounding.tsv (CHEBI:29101×1, CHEBI:29103×1, CHEBI:27592×1).